Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30305
         (441 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK127137-1|BAC86846.1|  160|Homo sapiens protein ( Homo sapiens ...    29   5.4  
M34057-1|AAA61160.1| 1394|Homo sapiens TGFB1 protein.                  29   9.4  
BC130289-1|AAI30290.1| 1395|Homo sapiens latent transforming gro...    29   9.4  
AF489528-1|AAM03124.1| 1394|Homo sapiens transforming growth fac...    29   9.4  
AC019195-1|AAY14953.1|  546|Homo sapiens unknown protein.              29   9.4  
AB208801-1|BAD92038.1| 1348|Homo sapiens latent transforming gro...    29   9.4  

>AK127137-1|BAC86846.1|  160|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45194 fis, clone BRAWH3049858. ).
          Length = 160

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 390 RRAEHKMNHHTSYINFNLIVNNLSTFYLTLHITT 289
           R +  K+N  T  +N+NL   +L+  Y T H TT
Sbjct: 21  RSSRQKVNKETRDLNYNLEQMDLTDIYRTFHATT 54


>M34057-1|AAA61160.1| 1394|Homo sapiens TGFB1 protein.
          Length = 1394

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 107 LCKYVCTARLCGETCEKQLPSTIIS 181
           +CK  CT   C  +CEK   +T+IS
Sbjct: 34  ICKVTCTKGSCQNSCEKGNTTTLIS 58


>BC130289-1|AAI30290.1| 1395|Homo sapiens latent transforming growth
           factor beta binding protein 1 protein.
          Length = 1395

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 107 LCKYVCTARLCGETCEKQLPSTIIS 181
           +CK  CT   C  +CEK   +T+IS
Sbjct: 34  ICKVTCTKGSCQNSCEKGNTTTLIS 58


>AF489528-1|AAM03124.1| 1394|Homo sapiens transforming growth
           factor-beta binding protein-1S protein.
          Length = 1394

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 107 LCKYVCTARLCGETCEKQLPSTIIS 181
           +CK  CT   C  +CEK   +T+IS
Sbjct: 34  ICKVTCTKGSCQNSCEKGNTTTLIS 58


>AC019195-1|AAY14953.1|  546|Homo sapiens unknown protein.
          Length = 546

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 107 LCKYVCTARLCGETCEKQLPSTIIS 181
           +CK  CT   C  +CEK   +T+IS
Sbjct: 34  ICKVTCTKGSCQNSCEKGNTTTLIS 58


>AB208801-1|BAD92038.1| 1348|Homo sapiens latent transforming growth
           factor beta binding protein 1 isoform LTBP-1S varian
           protein.
          Length = 1348

 Score = 28.7 bits (61), Expect = 9.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 107 LCKYVCTARLCGETCEKQLPSTIIS 181
           +CK  CT   C  +CEK   +T+IS
Sbjct: 40  ICKVTCTKGSCQNSCEKGNTTTLIS 64


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,149,866
Number of Sequences: 237096
Number of extensions: 733386
Number of successful extensions: 1203
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3602345922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)