Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30304
(809 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom... 107 2e-24
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 88 1e-18
SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 80 4e-16
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 72 1e-13
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc... 64 2e-11
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 63 4e-11
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 58 1e-09
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 29 0.59
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 28 1.8
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 27 2.4
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.4
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 27 2.4
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr... 26 5.5
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 25 9.6
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 25 9.6
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 25 9.6
>SPCC1795.04c |||20S proteasome component alpha
7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 253
Score = 107 bits (257), Expect = 2e-24
Identities = 50/88 (56%), Positives = 64/88 (72%)
Frame = +1
Query: 1 MSSIGTGYDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYE 180
MSSIGTGYDL FSPDGR+FQ EYA KAVEN+ T IG++ +DGV+ A+EK++TSKL +
Sbjct: 1 MSSIGTGYDLGLF-FSPDGRLFQAEYAYKAVENASTCIGIKCEDGVILALEKVVTSKLLK 59
Query: 181 PGANKRIFHIDEHVGMAVAGLISDADKL 264
P N RI +D H+G+A G I D +
Sbjct: 60 PRVNNRIGSVDRHIGIATTGFIPDGQHI 87
Score = 82.6 bits (195), Expect = 6e-17
Identities = 36/86 (41%), Positives = 57/86 (66%)
Frame = +3
Query: 255 RQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTLYSAVRPYGCSVVMGTWTDYE 434
+ IV+ AR EA+++R YGSP+P + +R+ Y+ +T YS+VRP+G + T+ D E
Sbjct: 85 QHIVKRARDEATSWRDNYGSPIPGTVIADRLGNYVQLFTCYSSVRPFGVMSFVATY-DSE 143
Query: 435 GPQMYMLDPSGVSFSYFGCAVGKANR 512
GP +YM++P+GV + Y G A GK +
Sbjct: 144 GPHLYMVEPNGVYWGYNGAAAGKGRQ 169
Score = 81.8 bits (193), Expect = 1e-16
Identities = 39/84 (46%), Positives = 56/84 (66%)
Frame = +2
Query: 500 KSQQAAKTEIEKLKLGDLTVKELVREAARIIYLVHDELKDKQFELELSWVSKDTKGRHEL 679
K +Q A+ E+EKL L +K+ V+EAARI+Y HDE +K+ E+E++WV +T G H
Sbjct: 166 KGRQVARNELEKLNFSSLKMKDAVKEAARILYATHDEENNKEHEIEMTWVGVETNGIHTP 225
Query: 680 VPRELATEAENQAKQALADIEDSD 751
VP EL EAE A++ +AD E+ D
Sbjct: 226 VPDELLQEAEAYARR-IADGEEED 248
>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 88.2 bits (209), Expect = 1e-18
Identities = 42/95 (44%), Positives = 63/95 (66%), Gaps = 3/95 (3%)
Frame = +1
Query: 22 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGANKRI 201
YD + FSP+GR+FQVEYA +A++ T IG++ KD VV VEK +TS L E + +++
Sbjct: 8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKDAVVLGVEKRLTSPLMESHSVEKL 67
Query: 202 FHIDEHVGMAVAGLISDADKL---SRLLVQRHQTT 297
F ID H+G A++GL +DA + +R+ Q H+ T
Sbjct: 68 FEIDSHIGCAISGLTADARTIIEHARVQTQNHRFT 102
Score = 37.9 bits (84), Expect = 0.002
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Frame = +3
Query: 255 RQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTLYS------AVRPYGCSVVMG 416
R I+E AR + N+R Y P ++ + + + RP+G ++++
Sbjct: 86 RTIIEHARVQTQNHRFTYDEPQGIESTTQSICDLALRFGEGEDGEERIMSRPFGVALLIA 145
Query: 417 TWTDYEGPQMYMLDPSGVSFSYFGCAVGKANRQQK 521
D GPQ+Y +PSG F Y A+G + K
Sbjct: 146 G-IDEHGPQLYHSEPSGTYFRYEAKAIGSGSEPAK 179
>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 79.8 bits (188), Expect = 4e-16
Identities = 37/82 (45%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Frame = +1
Query: 22 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGAN-KR 198
YD + FSP+GR++QVEYA +A+ ++G +G+ KDG+V A EK +TSKL E + ++
Sbjct: 5 YDSRTTIFSPEGRLYQVEYALEAINHAGVALGIVAKDGIVLAAEKKVTSKLLEQEESAEK 64
Query: 199 IFHIDEHVGMAVAGLISDADKL 264
++HI +++ AVAGL +DA+ L
Sbjct: 65 LYHIGDNMLCAVAGLTADANIL 86
Score = 46.0 bits (104), Expect = 6e-06
Identities = 22/80 (27%), Positives = 36/80 (45%)
Frame = +3
Query: 261 IVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTLYSAVRPYGCSVVMGTWTDYEGP 440
++ AR Y + +P + L RV YT Y +RP+G S + W G
Sbjct: 86 LINYARRVGQQYLQTFNEEMPCEQLVRRVCDLKQGYTQYGGLRPFGVSFLYAGWDHIRGY 145
Query: 441 QMYMLDPSGVSFSYFGCAVG 500
Q++ +PSG S+ ++G
Sbjct: 146 QLFQSNPSGNYGSWQANSIG 165
>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 71.7 bits (168), Expect = 1e-13
Identities = 40/95 (42%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Frame = +1
Query: 16 TGYDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGANK 195
+GYD + S FSPDGR+ QVEY +AV T I LRG + +V VE+ KL +
Sbjct: 2 SGYDRALSVFSPDGRLLQVEYGQEAVRRGTTAIALRGNECIVIGVERKNVPKLQNVSNFQ 61
Query: 196 RIFHIDEHVGMAVAGLISDADKL---SRLLVQRHQ 291
+I +D HV +A AGL +DA L +R+ Q H+
Sbjct: 62 KIAMVDNHVCLAFAGLNADARILIDKARVEAQNHK 96
Score = 55.2 bits (127), Expect = 1e-08
Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Frame = +3
Query: 255 RQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTLYSAVRPYGCS-VVMGTWTDY 431
R +++ AR EA N++ PV ++YL V+ YT VRP+G S ++ G
Sbjct: 82 RILIDKARVEAQNHKLNLADPVSIEYLTRYVAGVQQKYTQSGGVRPFGVSTLIAGFDVGD 141
Query: 432 EGPQMYMLDPSGVSFSYFGCAVGKANRQQKQ 524
P++Y +P+G+ ++ A+G+A++ ++
Sbjct: 142 NTPRVYQTEPAGIYNAWKATAIGRASKAARE 172
>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 64.5 bits (150), Expect = 2e-11
Identities = 31/80 (38%), Positives = 49/80 (61%), Gaps = 1/80 (1%)
Frame = +1
Query: 19 GYDLSASQFSPDGRVFQVEYAAKAVENSG-TVIGLRGKDGVVFAVEKLITSKLYEPGANK 195
G+D + + FSP+GR++QVEYA KA N+G T +G+ GK+ +K + KL + K
Sbjct: 6 GFDRTITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLIDASTVK 65
Query: 196 RIFHIDEHVGMAVAGLISDA 255
+F I + +G + G I+DA
Sbjct: 66 HVFPITKGIGCVMTGSIADA 85
Score = 50.8 bits (116), Expect = 2e-07
Identities = 26/82 (31%), Positives = 42/82 (51%)
Frame = +3
Query: 255 RQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTLYSAVRPYGCSVVMGTWTDYE 434
R V ARSEA+ + + G P+P L +R++ T +A+RP G ++ + D
Sbjct: 86 RAQVSRARSEAAEFEYKNGYPMPCDVLAKRMANIAQVSTQRAAMRPLGVAMTLVAVDDEI 145
Query: 435 GPQMYMLDPSGVSFSYFGCAVG 500
GP ++ LDP+G Y + G
Sbjct: 146 GPSLFKLDPAGFYIGYKATSAG 167
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 63.3 bits (147), Expect = 4e-11
Identities = 33/87 (37%), Positives = 48/87 (55%)
Frame = +1
Query: 22 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGANKRI 201
YD A+ +SP GR+ QVEYA +A++ +GL K V K +L K++
Sbjct: 6 YDGDATTWSPQGRLHQVEYALEAIKQGSATVGLVSKTHAVLVALKRNAEEL--SSYQKKL 63
Query: 202 FHIDEHVGMAVAGLISDADKLSRLLVQ 282
ID+H+G+A+AGL DA LS + Q
Sbjct: 64 IRIDDHIGIAIAGLAPDARVLSNYMKQ 90
Score = 39.5 bits (88), Expect = 6e-04
Identities = 20/82 (24%), Positives = 40/82 (48%)
Frame = +3
Query: 276 RSEASNYRSQYGSPVPLKYLNERVSMYMHAYTLYSAVRPYGCSVVMGTWTDYEGPQMYML 455
+ EA + ++ + P+P++ L +V+ T RPYG ++ + D GP +
Sbjct: 89 KQEALSSKTLFTRPIPVRRLMSKVAEKAQINTQEYGRRPYGVGFLVIGY-DESGPHLLEF 147
Query: 456 DPSGVSFSYFGCAVGKANRQQK 521
PSG+ Y G ++G ++ +
Sbjct: 148 QPSGLVLEYLGTSMGSRSQSAR 169
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 58.4 bits (135), Expect = 1e-09
Identities = 29/77 (37%), Positives = 45/77 (58%)
Frame = +1
Query: 22 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGANKRI 201
Y S + FSP+G++ Q+EYA AV T +G++ DGVV A EK TS+L + +++
Sbjct: 5 YAFSLTTFSPNGKLVQIEYALNAVNAGVTSVGIKATDGVVLATEKKPTSELAIGASLEKV 64
Query: 202 FHIDEHVGMAVAGLISD 252
I +GM +G+ D
Sbjct: 65 CAITPDIGMVYSGMGPD 81
Score = 55.2 bits (127), Expect = 1e-08
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Frame = +3
Query: 255 RQIVETARSEA-SNYRSQYGSPVPLKYLNERVSMYMHAYTLYSAVRPYGCSVVMGTWTDY 431
R +V+ +R A + Y+ Y P K L + ++ M T VRP+G S+++ D
Sbjct: 83 RVLVDKSRKVAQTTYKKIYNEYPPTKILVQEIASVMQESTQSGGVRPFGVSLLVAGM-DE 141
Query: 432 EGPQMYMLDPSGVSFSYFGCAVGKANRQQK 521
+GP +Y +DPSG F++ A+GK++ K
Sbjct: 142 KGPSLYQVDPSGTYFAWKATAIGKSSTAAK 171
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 29.5 bits (63), Expect = 0.59
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = +1
Query: 466 VYLFHILVAQSEKPTGSKNRDRKAKTWRPNSERTCERSR*NY 591
VYLFH+ +S PT +K D K +P+ +T R NY
Sbjct: 290 VYLFHVHEDKSYTPTFNKIEDSNKKPSKPSLLQTQPLKRKNY 331
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 27.9 bits (59), Expect = 1.8
Identities = 8/24 (33%), Positives = 19/24 (79%)
Frame = +1
Query: 490 AQSEKPTGSKNRDRKAKTWRPNSE 561
A +++ TG+K R +K+ +W+P+++
Sbjct: 492 ASNDEKTGNKKRKKKSVSWKPDND 515
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 27.5 bits (58), Expect = 2.4
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -3
Query: 156 LLNSKYHPVFSSEANYCSRIFYSLCSIFHLENAT 55
LL +KY V+SS N C +++ ++F +T
Sbjct: 488 LLRNKYPKVYSSTPNLCDQVWLDRTNLFPCNRST 521
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/68 (23%), Positives = 29/68 (42%)
Frame = -1
Query: 263 NLSASDMSPATAMPTCSSIWNILLFAPGSYNLDVINFSTANTTPSFPRRPITVPEFSTAF 84
N + S P T+ P SS + I P + T +T+ + PIT P +++
Sbjct: 554 NCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVLYTSTPITSPNSTSSS 613
Query: 83 AAYSTWKT 60
+ +W +
Sbjct: 614 STQVSWNS 621
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +1
Query: 496 SEKPTGSKNRDRKAKTWRPNSERTCERSR*NYLSC 600
S + T S+NR+RK K WR +E ER++ N L C
Sbjct: 160 SSEKTRSENRERK-KRWREQNE---ERNKDNDLRC 190
>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 581
Score = 26.2 bits (55), Expect = 5.5
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +2
Query: 461 QWCIFFIFWLRSRKSQQAAKTEIEKLKLGDLTVKELVREAARIIYLV 601
QW FFIFWL S + +I L T K +V A I +L+
Sbjct: 186 QWVGFFIFWLLSNIAIWFPVHQIRHL----FTFKAIVAPPAAIAFLI 228
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 25.4 bits (53), Expect = 9.6
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 270 TARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTLYSAVRPYGCSV 407
T ++S +YG+PVP+K++ + MH+ A+RP G S+
Sbjct: 413 TTSDDSSMRFWEYGTPVPIKFV---ADIAMHSMPRV-ALRPNGKSI 454
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 25.4 bits (53), Expect = 9.6
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 591 SILYMM-N*KISSLSWSCLGFRKTRRVAMSWF 683
S+ Y+M N KIS + W LG R ++ +S F
Sbjct: 386 SLHYLMSNIKISEIEWLVLGKRSNAKMCLSDF 417
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 25.4 bits (53), Expect = 9.6
Identities = 13/40 (32%), Positives = 26/40 (65%)
Frame = +1
Query: 127 KDGVVFAVEKLITSKLYEPGANKRIFHIDEHVGMAVAGLI 246
K G+V +V++ I + YE + +FHI E++ ++++ LI
Sbjct: 207 KSGLVNSVDRCI--QFYEKSISLPMFHIAENLAISLSCLI 244
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,258,844
Number of Sequences: 5004
Number of extensions: 67797
Number of successful extensions: 256
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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