Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30304
         (809 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)           136   2e-32
SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)                  82   6e-16
SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35)            63   3e-10
SB_46004| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_39358| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.5  
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_1272| Best HMM Match : Ras (HMM E-Value=8.9e-08)                    30   2.6  
SB_40084| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_53888| Best HMM Match : TSP_3 (HMM E-Value=9.2e-11)                 29   5.9  
SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_49533| Best HMM Match : Ldh_2 (HMM E-Value=0)                       28   7.8  
SB_43380| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_10060| Best HMM Match : SAP (HMM E-Value=0.016)                     28   7.8  

>SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)
          Length = 308

 Score =  136 bits (330), Expect = 2e-32
 Identities = 64/81 (79%), Positives = 72/81 (88%)
 Frame = +1

Query: 22  YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGANKRI 201
           YDLSASQFSPDGRVFQVEYA KAVENSGT I +R KDGVVF VEKL+ SKLYE GANKRI
Sbjct: 137 YDLSASQFSPDGRVFQVEYANKAVENSGTAIAIRCKDGVVFGVEKLVLSKLYEYGANKRI 196

Query: 202 FHIDEHVGMAVAGLISDADKL 264
           FHID H+GMA+AGLI+D+ ++
Sbjct: 197 FHIDTHIGMAIAGLIADSRQI 217



 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 36/51 (70%), Positives = 44/51 (86%)
 Frame = +3

Query: 255 RQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTLYSAVRPYGCSV 407
           RQIV TAR EA+NYRS YGSP+PLKYL  RVS ++HA+TLYSA+RP+GC +
Sbjct: 215 RQIVATAREEAANYRSVYGSPIPLKYLVNRVSGFIHAFTLYSAMRPFGCRI 265



 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 26/44 (59%), Positives = 34/44 (77%)
 Frame = +2

Query: 590 IYLVHDELKDKQFELELSWVSKDTKGRHELVPRELATEAENQAK 721
           IY+VHDE+KDK FELE+SW+   T G+HE VP+++A  AE  AK
Sbjct: 265 IYVVHDEVKDKNFELEMSWIGSVTNGKHECVPKDVADAAEKYAK 308


>SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)
          Length = 215

 Score = 81.8 bits (193), Expect = 6e-16
 Identities = 43/95 (45%), Positives = 61/95 (64%), Gaps = 3/95 (3%)
 Frame = +1

Query: 22  YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGANKRI 201
           YD + + FSPDG +FQVEYA +AV+   T +G+RG + VV  VE+   +KL EP   ++I
Sbjct: 5   YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGNNIVVLGVERKAVAKLQEPRTVRKI 64

Query: 202 FHIDEHVGMAVAGLISDADKL---SRLLVQRHQTT 297
             +D+HV MA AGL +DA  L   +R+  Q H+ T
Sbjct: 65  CTLDDHVLMAFAGLTADARILVNKARVECQSHKLT 99



 Score = 44.8 bits (101), Expect = 8e-05
 Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
 Frame = +3

Query: 255 RQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTLYSAVRPYGCSVVMGTWTDYE 434
           R +V  AR E  +++     PV L+Y+   ++     YT  +  RP+G S ++  + D++
Sbjct: 83  RILVNKARVECQSHKLTVEDPVTLEYITRFIATLKQRYTQSNGRRPFGISTLIVGF-DFD 141

Query: 435 G-PQMYMLDPSG 467
           G P++Y  DPSG
Sbjct: 142 GTPRLYQTDPSG 153


>SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35)
          Length = 224

 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 27/82 (32%), Positives = 49/82 (59%)
 Frame = +3

Query: 255 RQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTLYSAVRPYGCSVVMGTWTDYE 434
           R  V+ AR EA+N++ ++G  +P+  L +R++     YT  + +RP GC +++    + +
Sbjct: 66  RSQVQRARYEAANWKYKFGYEIPVDMLCKRIADISQVYTQNAEMRPLGCGMILIGIDEEK 125

Query: 435 GPQMYMLDPSGVSFSYFGCAVG 500
           GPQ+Y  DP+G    +  C+VG
Sbjct: 126 GPQLYKTDPAGYFCGFKACSVG 147



 Score = 32.3 bits (70), Expect = 0.48
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +1

Query: 19  GYDLSASQFSPDGRVFQVEYAAKAVENSG-TVIGLRGKDGVVFAVEKLI 162
           G+D   + FSP+GR++         +  G T +G+RG D  V   +K +
Sbjct: 8   GFDRHITIFSPEGRLYPSRVCFSGDQPGGLTSVGIRGADSAVVVTQKKV 56


>SB_46004| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 78

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 18/49 (36%), Positives = 30/49 (61%)
 Frame = +3

Query: 255 RQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTLYSAVRPYGC 401
           R  V+ AR EA+N++ ++G  +P+  L +RV+     YT  + +RP GC
Sbjct: 29  RSQVQRARYEAANWKYKFGYEIPVDMLCKRVADISQVYTQNAEMRPLGC 77


>SB_39358| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 147

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 23/63 (36%), Positives = 36/63 (57%)
 Frame = +2

Query: 491 RSRKSQQAAKTEIEKLKLGDLTVKELVREAARIIYLVHDELKDKQFELELSWVSKDTKGR 670
           RSRKS +A +   +K+K    T +ELV++  +  YL   ELK    +LEL+   K+ K +
Sbjct: 65  RSRKSAEAKRESKKKIKE---TERELVQKGKKPFYLRKSELK----KLELAEKYKELKSK 117

Query: 671 HEL 679
            +L
Sbjct: 118 GKL 120


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +1

Query: 178  EPGANKRIFHIDEHVGMAVAGLISDADKLSRLLVQRHQTTDLSMAVQ 318
            EP    +  H  +HV +A+ GL+S  DK S +L    +T+  S++ Q
Sbjct: 2008 EPLKLDKFEHQRKHVSLAIGGLLSALDKQSTVLRGSSKTSHSSLSSQ 2054


>SB_1272| Best HMM Match : Ras (HMM E-Value=8.9e-08)
          Length = 492

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
 Frame = +2

Query: 500 KSQQAAKTEIEKLKLGDLTVKEL----VREAARIIYLVHDELKDKQFELELSWV 649
           K+++AAKT+ E      +  KE+    + E  + I LV+D   DK FE   +W+
Sbjct: 54  KAKEAAKTKGEPTIFDKILSKEIPADIIYEDDKGIMLVYDITNDKSFEKHQNWI 107


>SB_40084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 384 VRPYGCSVVMGTWTDYEGPQMYMLDPS 464
           VRP+G S+++  W D + P ++  DPS
Sbjct: 3   VRPFGVSLLVAGWDD-DRPYLFQCDPS 28


>SB_53888| Best HMM Match : TSP_3 (HMM E-Value=9.2e-11)
          Length = 1012

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -1

Query: 239  PATAMP-TCSSIWNILLFAPGSYNLDVINFSTANTTPSFPRRPITVPEFSTAFAAYSTWK 63
            P T  P + S+   I    PGS +    + +T  T+P  P+ P T+P  +T      T K
Sbjct: 881  PTTTTPISTSAAPEITTANPGSPSTTTKSVTTPQTSPKTPQTPATLP--TTQTPEPGTEK 938

Query: 62   TRPS 51
            T P+
Sbjct: 939  TMPT 942


>SB_51222| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2520

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
 Frame = +2

Query: 608  ELKDKQFELE----LSWVSKDTKGRHELVPRELATEAENQAK 721
            +LK+K F+LE    L  +++     HEL+ R  +TE ENQAK
Sbjct: 1398 DLKEK-FDLEEKALLDKLAEKENSEHELMQRIESTEQENQAK 1438


>SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1615

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
 Frame = -3

Query: 387 EQHCIVCTRACTLKLVHLNTS----VVLDCHTEICSLMPLNEQSR 265
           E+ C +C   C L  V    S      LDC +E+C+  P ++  R
Sbjct: 690 ERQCQICKTTCFLSAVTCKCSEERLTCLDCASELCACRPSDKTLR 734


>SB_49533| Best HMM Match : Ldh_2 (HMM E-Value=0)
          Length = 883

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 23/89 (25%), Positives = 44/89 (49%)
 Frame = +2

Query: 494 SRKSQQAAKTEIEKLKLGDLTVKELVREAARIIYLVHDELKDKQFELELSWVSKDTKGRH 673
           +++  QA K E+EK K      + L+ +   +I    DEL+ +  + E++ + ++   RH
Sbjct: 699 TKQELQAVKQELEKEKEWRKKTEVLMTKQKSMI----DELR-QGIQGEIAKLLQEQAKRH 753

Query: 674 ELVPRELATEAENQAKQALADIEDSDEGE 760
           E +   L  E EN+  +   +  +  EGE
Sbjct: 754 EELRASLTNELENRTVKIPENTRNGIEGE 782


>SB_43380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 509

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 333 LNERVSMYMHAYTLYSAVRPYGCSVVMGTWTDYEGPQMYML 455
           + E+ S Y+ AY L   +     + ++GTW+D  G +  ML
Sbjct: 77  VQEKASQYILAYNLALQLPAVLTACLLGTWSDKNGRKPLML 117


>SB_10060| Best HMM Match : SAP (HMM E-Value=0.016)
          Length = 332

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
 Frame = -3

Query: 591 IILAASLTSSFTVRSPSFSFSISVFA-ACWLFRLRNQNMKKIHHWDLAYTSEGLHSLSMC 415
           I LA  L  +     P F    +  + +  L R + Q++   + W +AYT    H    C
Sbjct: 198 IDLALLLPDNLAHAGPEFQLRFAKNSESVRLLRNKRQSIDSFYKWVIAYT-RPFHRSEDC 256

Query: 414 P---*RLSNHMAEQHCIVCTRAC 355
           P    RL+ H +   CI C   C
Sbjct: 257 PSGQHRLATHRSP--CIHCNNVC 277


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,331,455
Number of Sequences: 59808
Number of extensions: 515488
Number of successful extensions: 1493
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1493
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)