Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30304
         (809 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    27   0.16 
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    25   0.83 
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   7.7  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    22   7.7  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   7.7  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 27.5 bits (58), Expect = 0.16
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +2

Query: 545  GDLTVKELVREAARIIYLVHDELKDKQFELELSWVSKDTKGRHELVPRELAT-EAENQAK 721
            GD T+ E V +  + I   H E+ DKQ E  +  +  + +   ++    L T E  N+++
Sbjct: 1073 GDCTMAEDVYQTLKHIIQTHGEMTDKQVEAYMLSLRDENRYHEDIFGITLRTAEVHNRSR 1132

Query: 722  Q 724
            +
Sbjct: 1133 E 1133


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 25.0 bits (52), Expect = 0.83
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 390 PYGCSVVMGTWTDYEGPQMY 449
           P GC+VV+GT+  +  P +Y
Sbjct: 435 PAGCTVVIGTFKLHRQPHIY 454


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 218 CSSIWNILLFAPGSYNLDVINFS 150
           C SIW + + A   YN+ V   S
Sbjct: 137 CGSIWTMTMIAFDRYNVIVKGLS 159


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 218 CSSIWNILLFAPGSYNLDVINFS 150
           C SIW + + A   YN+ V   S
Sbjct: 103 CGSIWTMTMIAFDRYNVIVKGLS 125


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 218 CSSIWNILLFAPGSYNLDVINFS 150
           C SIW + + A   YN+ V   S
Sbjct: 13  CGSIWTMTMIAFDRYNVIVKGLS 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,260
Number of Sequences: 438
Number of extensions: 4543
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)