Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30304
(809 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g27020.1 68415.m03244 20S proteasome alpha subunit G (PAG1) (... 128 4e-30
At3g14290.1 68416.m01808 20S proteasome alpha subunit E2 (PAE2) ... 96 2e-20
At1g53850.1 68414.m06129 20S proteasome alpha subunit E1 (PAE1) ... 96 2e-20
At3g22110.1 68416.m02791 20S proteasome alpha subunit C (PAC1) (... 86 2e-17
At5g66140.1 68418.m08332 20S proteasome alpha subunit D2 (PAD2) ... 82 5e-16
At3g51260.1 68416.m05611 20S proteasome alpha subunit D (PAD1) 82 5e-16
At5g35590.1 68418.m04237 20S proteasome alpha subunit A1 (PAA1) ... 78 8e-15
At2g05840.1 68415.m00632 20S proteasome alpha subunit A2 (PAA2) ... 77 1e-14
At5g42790.1 68418.m05212 20S proteasome alpha subunit F1 (PAF1) ... 73 2e-13
At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2) ... 73 2e-13
At1g79210.1 68414.m09235 20S proteasome alpha subunit B, putativ... 64 1e-10
At1g16470.1 68414.m01970 20S proteasome alpha subunit B (PAB1) (... 64 1e-10
At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid t... 40 0.002
At2g39510.1 68415.m04848 nodulin MtN21 family protein similar to... 31 0.90
At4g16530.1 68417.m02502 expressed protein contains Pfam profile... 30 2.1
At3g20710.1 68416.m02621 F-box protein-related contains weak hit... 28 6.4
At3g17450.1 68416.m02228 hAT dimerisation domain-containing prot... 28 8.4
At3g11590.1 68416.m01416 expressed protein 28 8.4
At1g44800.1 68414.m05132 nodulin MtN21 family protein similar to... 28 8.4
>At2g27020.1 68415.m03244 20S proteasome alpha subunit G (PAG1)
(PRC8) identical to proteasome subunit alpha type 3
SP:O23715, GI:12644056 from [Arabidopsis thaliana];
identical to cDNA proteasome subunit prc8 GI:2511591
Length = 249
Score = 128 bits (309), Expect = 4e-30
Identities = 58/88 (65%), Positives = 72/88 (81%)
Frame = +1
Query: 1 MSSIGTGYDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYE 180
MSSIGTGYDLS + FSPDGRVFQ+EYAAKAV+NSGTV+G++ KDG+V VEKLI SK+
Sbjct: 1 MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVVGIKCKDGIVMGVEKLIASKMML 60
Query: 181 PGANKRIFHIDEHVGMAVAGLISDADKL 264
PG+N+RI + H GMAVAGL +D ++
Sbjct: 61 PGSNRRIHSVHRHAGMAVAGLAADGRQI 88
Score = 108 bits (259), Expect = 5e-24
Identities = 49/97 (50%), Positives = 69/97 (71%)
Frame = +3
Query: 255 RQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTLYSAVRPYGCSVVMGTWTDYE 434
RQIV A+SEA +Y S YG VP+K L+ERV+ Y+H TLY +RP+GC V++G + D +
Sbjct: 86 RQIVARAKSEARSYESVYGDAVPVKELSERVASYVHLCTLYWWLRPFGCGVILGGY-DRD 144
Query: 435 GPQMYMLDPSGVSFSYFGCAVGKANRQQKQR*KS*NL 545
GPQ+YM++PSG+S+ YFG A+GK + K + NL
Sbjct: 145 GPQLYMIEPSGISYRYFGAAIGKGKQAAKTEIEKLNL 181
Score = 94.7 bits (225), Expect = 6e-20
Identities = 44/81 (54%), Positives = 60/81 (74%)
Frame = +2
Query: 500 KSQQAAKTEIEKLKLGDLTVKELVREAARIIYLVHDELKDKQFELELSWVSKDTKGRHEL 679
K +QAAKTEIEKL L ++T KE V E A+IIY +HDE KDK FELE+SW+ +++K H+
Sbjct: 167 KGKQAAKTEIEKLNLSEMTCKEGVIEVAKIIYKLHDEAKDKAFELEMSWICEESKREHQK 226
Query: 680 VPRELATEAENQAKQALADIE 742
VP +L EA+ AK AL +++
Sbjct: 227 VPDDLLEEAKTAAKTALEEMD 247
>At3g14290.1 68416.m01808 20S proteasome alpha subunit E2 (PAE2)
identical to 20S proteasome subunit PAE2 GB:AAC32061
from [Arabidopsis thaliana]
Length = 237
Score = 96.3 bits (229), Expect = 2e-20
Identities = 47/95 (49%), Positives = 67/95 (70%), Gaps = 3/95 (3%)
Frame = +1
Query: 16 TGYDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGANK 195
T YD + FSP+GR+FQVEYA +A++ T IG++ K+GVV AVEK ITS L EP + +
Sbjct: 6 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLLEPSSVE 65
Query: 196 RIFHIDEHVGMAVAGLISDADKL---SRLLVQRHQ 291
+I ID+H+G A++GLI+DA L +R+ Q H+
Sbjct: 66 KIMEIDDHIGCAMSGLIADARTLVEHARVETQNHR 100
Score = 42.7 bits (96), Expect = 3e-04
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Frame = +3
Query: 255 RQIVETARSEASNYRSQYGSPVPLKYLNER---VSMYMHAYTLYSAVRPYGCSVVMGTWT 425
R +VE AR E N+R YG P+ ++ + +++ S RP+G S+++
Sbjct: 86 RTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGEEESMSRPFGVSLLI-AGH 144
Query: 426 DYEGPQMYMLDPSGVSFSYFGCAVGKAN 509
D GP +Y DPSG + A+G +
Sbjct: 145 DENGPSLYYTDPSGTFWQCNAKAIGSGS 172
>At1g53850.1 68414.m06129 20S proteasome alpha subunit E1 (PAE1)
identical to 20S proteasome subunit PAE1 GI:3421087 from
[Arabidopsis thaliana]
Length = 237
Score = 96.3 bits (229), Expect = 2e-20
Identities = 47/95 (49%), Positives = 67/95 (70%), Gaps = 3/95 (3%)
Frame = +1
Query: 16 TGYDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGANK 195
T YD + FSP+GR+FQVEYA +A++ T IG++ K+GVV AVEK ITS L EP + +
Sbjct: 6 TEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLLEPSSVE 65
Query: 196 RIFHIDEHVGMAVAGLISDADKL---SRLLVQRHQ 291
+I ID+H+G A++GLI+DA L +R+ Q H+
Sbjct: 66 KIMEIDDHIGCAMSGLIADARTLVEHARVETQNHR 100
Score = 42.7 bits (96), Expect = 3e-04
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Frame = +3
Query: 255 RQIVETARSEASNYRSQYGSPVPLKYLNER---VSMYMHAYTLYSAVRPYGCSVVMGTWT 425
R +VE AR E N+R YG P+ ++ + +++ S RP+G S+++
Sbjct: 86 RTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGEEESMSRPFGVSLLI-AGH 144
Query: 426 DYEGPQMYMLDPSGVSFSYFGCAVGKAN 509
D GP +Y DPSG + A+G +
Sbjct: 145 DENGPSLYYTDPSGTFWQCNAKAIGSGS 172
>At3g22110.1 68416.m02791 20S proteasome alpha subunit C (PAC1)
(PRC9) identical to GB:AAC32057 from [Arabidopsis
thaliana] (Genetics (1998) 149 (2), 677-692); identical
to cDNA proteasome subunit prc9 GI:2511583
Length = 250
Score = 86.2 bits (204), Expect = 2e-17
Identities = 43/93 (46%), Positives = 66/93 (70%), Gaps = 4/93 (4%)
Frame = +1
Query: 22 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGAN-KR 198
YD + FSP+GR++QVEYA +A+ N+G+ IG+ KDGVV EK +TSKL + + ++
Sbjct: 5 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLIGEKKVTSKLLQTSTSAEK 64
Query: 199 IFHIDEHVGMAVAGLISDADKL---SRLLVQRH 288
++ ID+HV AVAG++SDA+ L +R+ QR+
Sbjct: 65 MYKIDDHVACAVAGIMSDANILINTARVQAQRY 97
Score = 62.5 bits (145), Expect = 3e-10
Identities = 31/88 (35%), Positives = 46/88 (52%)
Frame = +3
Query: 261 IVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTLYSAVRPYGCSVVMGTWTDYEGP 440
++ TAR +A Y Y P+P++ L + + YT + +RP+G S + W + G
Sbjct: 86 LINTARVQAQRYTFMYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKHHGF 145
Query: 441 QMYMLDPSGVSFSYFGCAVGKANRQQKQ 524
Q+YM DPSG + AVG AN Q Q
Sbjct: 146 QLYMSDPSGNYGGWKAAAVG-ANNQAAQ 172
>At5g66140.1 68418.m08332 20S proteasome alpha subunit D2 (PAD2)
(PRS1) (PRC6) identical to SP|O24616 Proteasome subunit
alpha type 7-2 (EC 3.4.25.1) (20S proteasome alpha
subunit D2) {Arabidopsis thaliana}
Length = 250
Score = 81.8 bits (193), Expect = 5e-16
Identities = 42/95 (44%), Positives = 59/95 (62%), Gaps = 3/95 (3%)
Frame = +1
Query: 22 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGANKRI 201
YD + + FSPDG +FQVEYA +AV +G+RG D VV AVEK T KL + + ++I
Sbjct: 4 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLAVEKKSTPKLQDSRSARKI 63
Query: 202 FHIDEHVGMAVAGLISDADKL---SRLLVQRHQTT 297
+D H+ +A AGL +DA L +R+ Q H+ T
Sbjct: 64 VSLDNHIALACAGLKADARVLINKARIECQSHRLT 98
>At3g51260.1 68416.m05611 20S proteasome alpha subunit D (PAD1)
Length = 250
Score = 81.8 bits (193), Expect = 5e-16
Identities = 42/95 (44%), Positives = 59/95 (62%), Gaps = 3/95 (3%)
Frame = +1
Query: 22 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGANKRI 201
YD + + FSPDG +FQVEYA +AV +G+RG D VV AVEK T KL + + ++I
Sbjct: 4 YDRAITVFSPDGHLFQVEYALEAVRKGNAAVGVRGTDTVVLAVEKKSTPKLQDSRSARKI 63
Query: 202 FHIDEHVGMAVAGLISDADKL---SRLLVQRHQTT 297
+D H+ +A AGL +DA L +R+ Q H+ T
Sbjct: 64 VSLDNHIALACAGLKADARVLINKARIECQSHRLT 98
>At5g35590.1 68418.m04237 20S proteasome alpha subunit A1 (PAA1)
(PRC1) identical to proteasome subunit alpha type 6-1
SP:O81146 GI:12643647 from [Arabidopsis thaliana];
identical to cDNA proteasome subunit prc1 GI:2511587
Length = 246
Score = 77.8 bits (183), Expect = 8e-15
Identities = 37/85 (43%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Frame = +1
Query: 13 GTGYDLSASQFSPDGRVFQVEYAAKAVENSG-TVIGLRGKDGVVFAVEKLITSKLYEPGA 189
G GYD + FSP+GR+FQVEYA KAV+ +G T IG+RGKD V +K + KL + +
Sbjct: 6 GAGYDRHITIFSPEGRLFQVEYAFKAVKTAGITSIGVRGKDSVCVVTQKKVPDKLLDQSS 65
Query: 190 NKRIFHIDEHVGMAVAGLISDADKL 264
+F I +++G+ G+ +DA L
Sbjct: 66 VTHLFPITKYIGLVATGITADARSL 90
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Frame = +3
Query: 255 RQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTLYSAVRPYGC-SVVMGTWTDY 431
R +V+ AR++A+ +R YG +P+ L + ++ YT ++ +RP G ++VMG +
Sbjct: 88 RSLVQQARNQAAEFRFTYGYEMPVDILAKWIADKSQVYTQHAYMRPLGVVAMVMGV-DEE 146
Query: 432 EGPQMYMLDPSGVSFSYFGCAVGKANRQ 515
GP +Y DP+G + + + G ++
Sbjct: 147 NGPLLYKCDPAGHFYGHKATSAGMKEQE 174
>At2g05840.1 68415.m00632 20S proteasome alpha subunit A2 (PAA2)
identical to GB:AF043519
Length = 246
Score = 77.0 bits (181), Expect = 1e-14
Identities = 41/104 (39%), Positives = 61/104 (58%), Gaps = 1/104 (0%)
Frame = +1
Query: 13 GTGYDLSASQFSPDGRVFQVEYAAKAVENSG-TVIGLRGKDGVVFAVEKLITSKLYEPGA 189
G GYD + FSP+GR+FQVEYA KAV+ +G T IG+RGKD V +K + KL + +
Sbjct: 6 GAGYDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQSS 65
Query: 190 NKRIFHIDEHVGMAVAGLISDADKLSRLLVQRHQTTDLSMAVQY 321
+F + +++G+ G+ +D SR LVQ+ + QY
Sbjct: 66 VSHLFPVTKYLGLLATGMTAD----SRSLVQQARNEAAEFRFQY 105
Score = 50.8 bits (116), Expect = 1e-06
Identities = 24/87 (27%), Positives = 46/87 (52%)
Frame = +3
Query: 255 RQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTLYSAVRPYGCSVVMGTWTDYE 434
R +V+ AR+EA+ +R QYG +P L + ++ YT ++ +RP G ++ +
Sbjct: 88 RSLVQQARNEAAEFRFQYGYEMPADILAKWIADKSQVYTQHAYMRPLGVVAMVLGIDEER 147
Query: 435 GPQMYMLDPSGVSFSYFGCAVGKANRQ 515
GP +Y DP+G + + + G ++
Sbjct: 148 GPLLYKCDPAGHFYGHKATSAGMKEQE 174
>At5g42790.1 68418.m05212 20S proteasome alpha subunit F1 (PAF1)
(gb|AAC32062.1)
Length = 278
Score = 72.9 bits (171), Expect = 2e-13
Identities = 36/85 (42%), Positives = 52/85 (61%)
Frame = +1
Query: 22 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGANKRI 201
YD + +SP GR+FQVEYA +AV+ IGLR + VV A S+L ++I
Sbjct: 6 YDTDVTTWSPTGRLFQVEYAMEAVKQGSAAIGLRSRSHVVLACVNKAQSEL--SSHQRKI 63
Query: 202 FHIDEHVGMAVAGLISDADKLSRLL 276
F +D+H+G+A+AGL +D LSR +
Sbjct: 64 FKVDDHIGVAIAGLTADGRVLSRYM 88
Score = 43.6 bits (98), Expect = 2e-04
Identities = 27/82 (32%), Positives = 40/82 (48%)
Frame = +3
Query: 276 RSEASNYRSQYGSPVPLKYLNERVSMYMHAYTLYSAVRPYGCSVVMGTWTDYEGPQMYML 455
RSE+ N+ Y SP+P+ L ++ T S RPYG +++G D G +Y
Sbjct: 89 RSESINHSFTYESPLPVGRLVVHLADKAQVCTQRSWKRPYGVGLLVG-GLDESGAHLYYN 147
Query: 456 DPSGVSFSYFGCAVGKANRQQK 521
PSG F Y A+G ++ K
Sbjct: 148 CPSGNYFEYQAFAIGSRSQAAK 169
>At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2)
(PRC2B) (PRS1) identical to GB:AAC32063 from
[Arabidopsis thaliana] (Genetics 149 (2), 677-692
(1998)); identical to cDNA proteasome subunit prc2b
GI:2511585
Length = 277
Score = 72.9 bits (171), Expect = 2e-13
Identities = 36/85 (42%), Positives = 52/85 (61%)
Frame = +1
Query: 22 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGANKRI 201
YD + +SP GR+FQVEYA +AV+ IGLR + VV A S+L ++I
Sbjct: 6 YDTDVTTWSPTGRLFQVEYAMEAVKQGSAAIGLRSRSHVVLACVNKAQSEL--SSHQRKI 63
Query: 202 FHIDEHVGMAVAGLISDADKLSRLL 276
F +D+H+G+A+AGL +D LSR +
Sbjct: 64 FKVDDHIGVAIAGLTADGRVLSRYM 88
Score = 43.6 bits (98), Expect = 2e-04
Identities = 27/82 (32%), Positives = 40/82 (48%)
Frame = +3
Query: 276 RSEASNYRSQYGSPVPLKYLNERVSMYMHAYTLYSAVRPYGCSVVMGTWTDYEGPQMYML 455
RSE+ N+ Y SP+P+ L ++ T S RPYG +++G D G +Y
Sbjct: 89 RSESINHSFTYESPLPVGRLVVHLADKAQVCTQRSWKRPYGVGLLVG-GLDESGAHLYYN 147
Query: 456 DPSGVSFSYFGCAVGKANRQQK 521
PSG F Y A+G ++ K
Sbjct: 148 CPSGNYFEYQAFAIGSRSQAAK 169
>At1g79210.1 68414.m09235 20S proteasome alpha subunit B, putative
nearly identical to SP|O23708 Proteasome subunit alpha
type 2 (EC 3.4.25.1) (20S proteasome alpha subunit B)
{Arabidopsis thaliana} and to At1g16470
Length = 235
Score = 63.7 bits (148), Expect = 1e-10
Identities = 30/83 (36%), Positives = 47/83 (56%)
Frame = +3
Query: 255 RQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTLYSAVRPYGCSVVMGTWTDYE 434
R +V +R +A Y Y P+P+ L + M +T VRP+G S+++ + D +
Sbjct: 84 RVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQEFTQSGGVRPFGVSLLVAGYDD-K 142
Query: 435 GPQMYMLDPSGVSFSYFGCAVGK 503
GPQ+Y +DPSG FS+ A+GK
Sbjct: 143 GPQLYQVDPSGSYFSWKASAMGK 165
Score = 58.0 bits (134), Expect = 7e-09
Identities = 28/83 (33%), Positives = 48/83 (57%)
Frame = +1
Query: 22 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGANKRI 201
Y S + FSP G++ Q+E+A AV + T +G++ +GVV A EK + S L + + ++I
Sbjct: 6 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDEASVQKI 65
Query: 202 FHIDEHVGMAVAGLISDADKLSR 270
H+ ++G +G+ D L R
Sbjct: 66 QHLTPNIGTVYSGMGPDFRVLVR 88
>At1g16470.1 68414.m01970 20S proteasome alpha subunit B (PAB1)
(PRC3) identical to proteasome subunit alpha type 2
SP:O23708, GI:6093778; identical to cDNA proteasome
subunit prc3 GI:2511573
Length = 235
Score = 63.7 bits (148), Expect = 1e-10
Identities = 30/83 (36%), Positives = 47/83 (56%)
Frame = +3
Query: 255 RQIVETARSEASNYRSQYGSPVPLKYLNERVSMYMHAYTLYSAVRPYGCSVVMGTWTDYE 434
R +V +R +A Y Y P+P+ L + M +T VRP+G S+++ + D +
Sbjct: 84 RVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQEFTQSGGVRPFGVSLLVAGYDD-K 142
Query: 435 GPQMYMLDPSGVSFSYFGCAVGK 503
GPQ+Y +DPSG FS+ A+GK
Sbjct: 143 GPQLYQVDPSGSYFSWKASAMGK 165
Score = 58.8 bits (136), Expect = 4e-09
Identities = 28/83 (33%), Positives = 49/83 (59%)
Frame = +1
Query: 22 YDLSASQFSPDGRVFQVEYAAKAVENSGTVIGLRGKDGVVFAVEKLITSKLYEPGANKRI 201
Y S + FSP G++ Q+E+A AV + T +G++ +GVV A EK + S L + + ++I
Sbjct: 6 YSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDEASVQKI 65
Query: 202 FHIDEHVGMAVAGLISDADKLSR 270
H+ ++G+ +G+ D L R
Sbjct: 66 QHLTPNIGVVYSGMGPDFRVLVR 88
>At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 428
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/39 (48%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Frame = +1
Query: 127 KDGVVFAVEKLITSKLYEPGAN-KRIFHIDEHVGMAVAG 240
KDGVV EK +TSKL + ++ ++++ ID+HV AVAG
Sbjct: 322 KDGVVLVGEKKVTSKLLQTSSSMEKMYKIDDHVACAVAG 360
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/35 (45%), Positives = 18/35 (51%)
Frame = +3
Query: 420 WTDYEGPQMYMLDPSGVSFSYFGCAVGKANRQQKQ 524
W G Q+YM DPSG + AVG AN Q Q
Sbjct: 361 WDRNHGFQLYMSDPSGNYGGWQAAAVG-ANNQAAQ 394
>At2g39510.1 68415.m04848 nodulin MtN21 family protein similar to
MtN21 GI:2598575 (root nodule development) from
[Medicago truncatula]
Length = 374
Score = 31.1 bits (67), Expect = 0.90
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = -3
Query: 582 AASLTSSFTVRSPSFSFSISVFAACWLFRLRNQNMKKIH 466
+A+ T++ T P+F+F ++ W+FRL N+KKIH
Sbjct: 97 SATFTAAMTNVLPAFAFIMA-----WIFRLEKVNVKKIH 130
>At4g16530.1 68417.m02502 expressed protein contains Pfam profile
PF04510: Family of unknown function (DUF577)
Length = 774
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/73 (30%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Frame = +2
Query: 512 AAKTEIEKLKLGDLTVKELVREAARIIYLVHDELKDKQFELELSW--VSKDTKGRHELVP 685
A+ EIE + +G T KE+VR+ ++ +D+LK+++ E E W + KD E++
Sbjct: 284 ASMNEIEGV-VGTET-KEIVRKIKMLVTEPYDDLKNRREEFERGWYDILKDLSSL-EVLK 340
Query: 686 RELATEAENQAKQ 724
++E E+++K+
Sbjct: 341 ILASSELEDRSKE 353
>At3g20710.1 68416.m02621 F-box protein-related contains weak hit to
TIGRFAM TIGR01640 : F-box protein interaction domain;
contains weak hit to Pfam PF00646: F-box domain
Length = 362
Score = 28.3 bits (60), Expect = 6.4
Identities = 17/63 (26%), Positives = 33/63 (52%)
Frame = +3
Query: 297 RSQYGSPVPLKYLNERVSMYMHAYTLYSAVRPYGCSVVMGTWTDYEGPQMYMLDPSGVSF 476
R ++G+P+PL + NE +++ Y SA++ +V++ W ++P VS+
Sbjct: 225 RERFGTPLPLPFSNEGYTLH-KGYKSLSALKEEKLAVLL--WDTMVIWVTNKIEPDAVSW 281
Query: 477 SYF 485
S F
Sbjct: 282 SIF 284
>At3g17450.1 68416.m02228 hAT dimerisation domain-containing protein
contains Pfam profile PF04937: Protein of unknown
function (DUF 659)
Length = 877
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Frame = +3
Query: 396 GCSVVMGTWTDYEGPQM--YMLD-PSGVSF 476
GCS++ TWT+ EG +M +++ P GV F
Sbjct: 374 GCSIMADTWTNTEGKKMISFLVSCPRGVYF 403
>At3g11590.1 68416.m01416 expressed protein
Length = 622
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +2
Query: 518 KTEIEKLKLGDLTVKELVREAARIIYLVHDELKDKQFELELS 643
K E+E+LK VKE V + ++ L D L++++ +++LS
Sbjct: 378 KAEVEELKRESFKVKEEVEKEREMLQLA-DALREERVQMKLS 418
>At1g44800.1 68414.m05132 nodulin MtN21 family protein similar to
MtN21 [Medicago truncatula] GI:2598575; contains Pfam
profile PF00892: Integral membrane protein
Length = 370
Score = 27.9 bits (59), Expect = 8.4
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = -3
Query: 582 AASLTSSFTVRSPSFSFSISVFAACWLFRLRNQNMKKIH 466
+AS TS+FT P+ +F +++ +FRL N +K+H
Sbjct: 100 SASYTSAFTNALPAVTFILAL-----IFRLETVNFRKVH 133
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,943,467
Number of Sequences: 28952
Number of extensions: 353049
Number of successful extensions: 1268
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1255
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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