Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30303
         (701 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    26   0.34 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   1.0  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   3.2  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   9.7  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   9.7  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   9.7  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 244 QRVRIDFAKGDKPVVAGRDADGNK 315
           Q  R+ + K D P  AG+ ++GNK
Sbjct: 166 QNRRVKYKKEDLPAAAGKASNGNK 189


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 636 DVSGFPTIFWKPKDSSKKPQRY 701
           ++   P   WK  DSSKK  RY
Sbjct: 220 EIEDEPDHKWKKNDSSKKKTRY 241



 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 368 TCSMASWSHS*NPRPYRKTTAQ 433
           T ++ASWS   NP+ Y +  A+
Sbjct: 425 TSALASWSPLTNPKQYMEIFAR 446


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 2   RHRESVTQSFHQGELSRS 55
           + RE +T  FH GE+  S
Sbjct: 559 KSREKLTMKFHDGEVDAS 576


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 247  RVRIDFAKGDKPVVAGRDADGNK 315
            RV   +AK D   + GRD D  K
Sbjct: 2187 RVLRGYAKPDPKCILGRDNDKTK 2209


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 78  NIHDFSNPLIVAYYDVDYTKNPKALTTG 161
           N HD +NPL V        +N  + T G
Sbjct: 753 NPHDINNPLSVNQLTGQCVRNDSSDTNG 780


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 78  NIHDFSNPLIVAYYDVDYTKNPKALTTG 161
           N HD +NPL V        +N  + T G
Sbjct: 645 NPHDINNPLSVNQLTGQCVRNDSSDTNG 672


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,425
Number of Sequences: 336
Number of extensions: 2663
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)