Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30303
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    65   8e-12
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    64   2e-11
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    48   1e-06
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    33   0.052
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    30   0.28 
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    30   0.28 
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    28   1.5  
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha...    27   2.6  
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    27   3.4  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    26   6.0  
SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein Tea4|Schi...    26   6.0  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   7.9  
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    25   7.9  

>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 65.3 bits (152), Expect = 8e-12
 Identities = 29/62 (46%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
 Frame = +3

Query: 513 WCGHCQKLAPVWEELGEKLKD-EEVDIIKIDATANDWPKSQFDVSGFPTIFWKPKDSSKK 689
           WCGHC+ LAPV+EELG   +D  +V I KIDA  +     ++ ++GFPT+ W P D S+ 
Sbjct: 50  WCGHCKSLAPVYEELGALFEDHNDVLIGKIDADTHSDVADKYHITGFPTLIWFPPDGSEP 109

Query: 690 PQ 695
            Q
Sbjct: 110 VQ 111



 Score = 59.7 bits (138), Expect = 4e-10
 Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
 Frame = +3

Query: 513 WCGHCQKLAPVWEELGEKLKDE-EVDIIKIDATANDWPKSQFDVSGFPTIFWKPKDSSKK 689
           WCG+C++LAP +E LG+  K+E  V+I+KI+A          +V+ FPTI + PKD   K
Sbjct: 169 WCGYCKRLAPTYETLGKVFKNEPNVEIVKINADVFADIGRLHEVASFPTIKFFPKDDKDK 228

Query: 690 PQRY 701
           P+ Y
Sbjct: 229 PELY 232



 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 454 NFKELVTDSNRDALIEFYGHGADTVRSLLP 543
           NF ++V D  +D L+EFY       + L P
Sbjct: 149 NFDKVVMDDKKDVLVEFYADWCGYCKRLAP 178


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 63.7 bits (148), Expect = 2e-11
 Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
 Frame = +3

Query: 510 PWCGHCQKLAPVWEELGEKLKDE-EVDIIKIDATANDWPKSQFDVSGFPTIFWKPKDSSK 686
           PWCGHC+ LAP +E+L E+  D+  V + KIDAT ND   S   +SGFPTI +   +   
Sbjct: 383 PWCGHCKNLAPTYEKLAEEYSDDSNVVVAKIDATENDISVS---ISGFPTIMFFKANDKV 439

Query: 687 KPQRY 701
            P RY
Sbjct: 440 NPVRY 444



 Score = 59.3 bits (137), Expect = 5e-10
 Identities = 26/73 (35%), Positives = 42/73 (57%)
 Frame = +1

Query: 325 SAEFSIENLLTFTKDLLDGKLEPFVKSEAIPENDGPVKVAVGKNFKELVTDSNRDALIEF 504
           + E + + +  F  D +DGKL+P +KS+ IPE+   + V V  NF ++V D  +D L+EF
Sbjct: 321 TTELTAKAMTKFVGDFVDGKLQPKIKSQPIPESQEDLVVLVADNFDDIVMDETKDVLVEF 380

Query: 505 YGHGADTVRSLLP 543
           Y       ++L P
Sbjct: 381 YAPWCGHCKNLAP 393



 Score = 52.8 bits (121), Expect = 5e-08
 Identities = 17/50 (34%), Positives = 33/50 (66%)
 Frame = +3

Query: 510 PWCGHCQKLAPVWEELGEKLKDEEVDIIKIDATANDWPKSQFDVSGFPTI 659
           PWCGHC+ LAP +E   ++L+ + + ++++D T      S++ + G+PT+
Sbjct: 49  PWCGHCKALAPEYESAADELEKDGISLVEVDCTEEGDLCSEYSIRGYPTL 98


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = +3

Query: 510 PWCGHCQKLAPVWEELGEKLKD-EEVDIIKIDATANDWPKSQFDVSGFPTI 659
           PWCG+C+KL P +++L   L     V  +  DA  N    SQ+ V GFPTI
Sbjct: 58  PWCGYCKKLVPTYQKLASNLHSLLPVTAVDCDADQNRAVCSQYQVQGFPTI 108


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 32.7 bits (71), Expect = 0.052
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +3

Query: 510 PWCGHCQKLAPVWEELGEKLKDE 578
           P CG C++L P+W+ + EK K++
Sbjct: 52  PSCGACKRLGPMWDNMVEKAKEQ 74


>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = +3

Query: 513 WCGHCQKLAPVWEELGEKLKDEEVDIIKIDATANDWPKSQFDVSGFPT 656
           WCG C+ ++P++ +L  K    +    K++        S   V   PT
Sbjct: 30  WCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPT 77


>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +3

Query: 513 WCGHCQKLAPVWEELGEKLKDEEVDIIKIDATANDWPKSQFDVSGFPTIF 662
           WCG C+ +AP +E+      D     IK+D        ++  V   P+ F
Sbjct: 29  WCGPCKAIAPKFEQFSNTYSD--ATFIKVDVDQLSEIAAEAGVHAMPSFF 76


>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = +3

Query: 519 GHCQKLAPVWEELGEKLKDEEVDIIKIDATANDWPKSQFDVSGFPTIFWKPKDSSKKPQR 698
           G  + L+P W+++ +  KD    ++ +D      P+ ++D+  F    W  K  SK P+ 
Sbjct: 308 GEFEFLSPWWDDISDSAKDLITHLLTVD------PRERYDIHQFFQHPW-IKGESKMPEN 360

Query: 699 Y 701
           +
Sbjct: 361 F 361


>SPBC12D12.07c |trx2||mitochondrial thioredoxin
           Trx2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +3

Query: 513 WCGHCQKLAPVWEELGEKLKDEEVDIIKIDA 605
           WCG C+ L P  E+L E  ++++   I ++A
Sbjct: 46  WCGPCKYLKPFLEKLSE--QNQKASFIAVNA 74


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/45 (22%), Positives = 24/45 (53%)
 Frame = +2

Query: 128 LYQEPEGTNYWRNRVLKVAKEQTEATFAVSDKDDFTHELNEFAST 262
           L ++PE  N+W+  V +  K +     A+++ D++    ++  +T
Sbjct: 387 LNKKPEDLNFWKKSVPETDKSRVLNLLAMAEDDEYDDTYDDLDTT 431


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = -3

Query: 555 ALPRREQASDSVRTMAIEFYECVPVAVRDQFLEVLADGYLHWAVVFRYGLGFHEWLQLAI 376
           ALP++ +A    RT  I      P+    +FL     G++    V+  GL + + LQ  +
Sbjct: 631 ALPKQTEAIFHARTSFISSDTFQPIPSNQEFLRTGLLGFIRKGKVYVLGL-YEDRLQQKV 689

Query: 375 EQV 367
           E V
Sbjct: 690 EWV 692


>SPBC1706.01 |tea4|wsh3|tip elongation aberrant protein
           Tea4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 209 AVSDKDDFTHELNEFASTSLKATSP*WPAATQTETNSS 322
           A  D  +     N+F STS ++TSP      +TE N S
Sbjct: 284 AYVDLTELEGGFNQFNSTSFQSTSPLGLEIVETEINGS 321


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
 Frame = +1

Query: 346  NLLTFTKDLLDGKLE---PFVKSEAIP 417
            NLL F ++L+DG L+   PF++   +P
Sbjct: 1952 NLLVFARNLMDGSLQNDYPFLQLNILP 1978


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 510 PWCGHCQKLAPVWEELGEKLKDEEVDII 593
           PW    +++A V EE   ++K  E+DI+
Sbjct: 454 PWLRKTEQIAVVHEEHPAQIKKSEIDIL 481


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,587,466
Number of Sequences: 5004
Number of extensions: 48021
Number of successful extensions: 182
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)