Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30302X
         (490 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    64   8e-12
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    26   3.5  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    25   4.6  
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    25   4.6  
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   6.1  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    25   8.1  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   8.1  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 64.5 bits (150), Expect = 8e-12
 Identities = 31/66 (46%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
 Frame = +3

Query: 36  MAVGDVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQGFEQVGKAP-AANLPHVLRWYNQI 212
           M   D+ +  GL  LN +L +KS++ GY PSQAD   F+ VG AP  A  P+  RWY QI
Sbjct: 1   MGFSDLTSDAGLKQLNDFLLDKSFIEGYEPSQADAVVFKAVGVAPDTAKYPNGARWYKQI 60

Query: 213 ASYTSA 230
           A+Y  A
Sbjct: 61  ATYDLA 66



 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = +2

Query: 410 KKSKKPALIAKSSILLDVQPWDDDTDM 490
           KK+ KP  + KS + LDV+PWDD+T M
Sbjct: 118 KKAAKPKAVHKSLVTLDVKPWDDETPM 144


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = -3

Query: 233 FSRSV*SNLIIPS*YVGKVSGRRLANLLKSLNISLRRS----VSRHVAFLS 93
           F  ++ + +I+PS  +G   GR +  LLKS   SL  +    V   +AFLS
Sbjct: 402 FGAAIPTGIIVPSLAIGACIGRAVGTLLKSRFPSLAGTSIYGVIGSIAFLS 452


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 20/55 (36%), Positives = 25/55 (45%)
 Frame = +1

Query: 112 LDTLLLKLMFKDLSKLARRRPLTFPTYYDGIIKLLHTLRLNAKHGLRAQPIDRRC 276
           LDTLL  L  +DL+      PLT  T    + KLL    +N  H    Q +D  C
Sbjct: 194 LDTLL-PLEIEDLALPLSLYPLTVLTQNPNLPKLLERPDINDLHQGILQELDSLC 247


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 12  KVATLKETMAVGDVKTAQGLNDLNQYLAEKSYV 110
           K  TLK  + V DVKT  G +  N    E  Y+
Sbjct: 251 KTRTLKGGVVVTDVKTGSGASATNGKKVEMRYI 283


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 207 DYTIVVRGEG*RPAPCQLAQILEHQLE 127
           +Y +VV G G  P  C +   L  QLE
Sbjct: 308 NYPVVVNGNGVNPYLCDVQAFLTSQLE 334


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 109 CLDTLLLKLMFKDLSKLARRRP 174
           CLD LL  L  +DL ++A +RP
Sbjct: 482 CLDNLLSVLPNEDLMEIADKRP 503


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 225  KCMKQFDYTIVVRGEG*RPAPCQLAQILE 139
            +C+K  DY    R +G   +P  + Q+LE
Sbjct: 2710 RCLKALDYIFERRPKGQEQSPGNIIQLLE 2738


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,601,155
Number of Sequences: 5004
Number of extensions: 25679
Number of successful extensions: 70
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)