BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30302X (490 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890... 54 8e-08 03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631... 54 8e-08 07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615... 46 2e-05 01_06_1167 - 35062766-35062870,35063165-35063228,35063647-350637... 33 0.093 09_06_0229 + 21709510-21709532,21710021-21710041,21712386-21713577 27 6.1 01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443 27 6.1 >07_03_1580 + 27888275-27888360,27888755-27888871,27888964-27889045, 27889710-27889821,27889958-27890071,27890163-27890326 Length = 224 Score = 53.6 bits (123), Expect = 8e-08 Identities = 24/57 (42%), Positives = 35/57 (61%) Frame = +3 Query: 48 DVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQGFEQVGKAPAANLPHVLRWYNQIAS 218 D+ TA GL L Q+L+ K+YVSG S+ D++ F V P A P+ RWY+ +A+ Sbjct: 7 DLHTADGLKALEQHLSGKTYVSGNAISKDDIKVFAAVPSKPGAEFPNAARWYDTVAA 63 Score = 39.9 bits (89), Expect = 0.001 Identities = 17/27 (62%), Positives = 20/27 (74%) Frame = +2 Query: 410 KKSKKPALIAKSSILLDVQPWDDDTDM 490 K S K KSS+LLDV+PWDD+TDM Sbjct: 125 KASSKKKESGKSSVLLDVKPWDDETDM 151 >03_04_0016 + 16461542-16461566,16462701-16462732,16463015-16463100, 16463189-16463305,16463399-16463474,16463695-16463818, 16464482-16464595,16464700-16464947 Length = 273 Score = 53.6 bits (123), Expect = 8e-08 Identities = 23/61 (37%), Positives = 39/61 (63%) Frame = +3 Query: 36 MAVGDVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQGFEQVGKAPAANLPHVLRWYNQIA 215 + + +V + GL L++YL +SY+SGY S+ D+ F + APAA+ +V RWY+ I+ Sbjct: 22 ITLSNVNSEAGLQKLDEYLLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHIS 81 Query: 216 S 218 + Sbjct: 82 A 82 Score = 39.1 bits (87), Expect = 0.002 Identities = 17/27 (62%), Positives = 20/27 (74%) Frame = +2 Query: 410 KKSKKPALIAKSSILLDVQPWDDDTDM 490 K S K KSS+LLDV+PWDD+TDM Sbjct: 146 KASGKKKESGKSSVLLDVKPWDDETDM 172 >07_03_1260 - 25260872-25261101,25261199-25261312,25261473-25261596, 25261755-25261839,25261917-25262033,25262122-25262207 Length = 251 Score = 46.0 bits (104), Expect = 2e-05 Identities = 19/55 (34%), Positives = 32/55 (58%) Frame = +3 Query: 48 DVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQGFEQVGKAPAANLPHVLRWYNQI 212 +V + GL L++YL +SY+SGY S D+ + AP+++ +V RW+ I Sbjct: 7 NVSSEAGLKKLDEYLLTRSYISGYQASNDDLAVYSAFSTAPSSSYTNVARWFTHI 61 Score = 39.1 bits (87), Expect = 0.002 Identities = 17/27 (62%), Positives = 20/27 (74%) Frame = +2 Query: 410 KKSKKPALIAKSSILLDVQPWDDDTDM 490 K S K KSS+LLDV+PWDD+TDM Sbjct: 130 KASGKKKESGKSSVLLDVKPWDDETDM 156 >01_06_1167 - 35062766-35062870,35063165-35063228,35063647-35063738, 35064137-35064205,35064322-35064412,35064509-35064732, 35065064-35065180,35065583-35065651,35066172-35066237, 35066335-35066505,35066581-35066661,35067620-35067700 Length = 409 Score = 33.5 bits (73), Expect = 0.093 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 9/57 (15%) Frame = +3 Query: 69 LNDLNQYLAEKSYV--SGYTPSQADVQGFEQV-------GKAPAANLPHVLRWYNQI 212 L +LNQ L++KS + +G+ PS AD+ F + G+ PHVLRW + I Sbjct: 76 LGNLNQDLSQKSVLLGNGFKPSVADIVVFATIQVFVSHLGENELQKYPHVLRWMDYI 132 >09_06_0229 + 21709510-21709532,21710021-21710041,21712386-21713577 Length = 411 Score = 27.5 bits (58), Expect = 6.1 Identities = 20/59 (33%), Positives = 26/59 (44%) Frame = +3 Query: 24 LKETMAVGDVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQGFEQVGKAPAANLPHVLRW 200 L+E +A + K A G+ A S TP ADV + PAA+LP RW Sbjct: 24 LREMVAAAEAKAAIGVATPTPTAAPCG--STTTPRDADVDDKMTIVGHPAASLPLETRW 80 >01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443 Length = 221 Score = 27.5 bits (58), Expect = 6.1 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 7/60 (11%) Frame = +3 Query: 60 AQGLNDLNQYLAEKSYVSGYTPSQADVQGFEQV---GKAPAANL----PHVLRWYNQIAS 218 AQ L+ + +LA Y++G S AD + K P A L PHV W++ I+S Sbjct: 145 AQVLDVYDAHLAGSRYLAGNRFSLADANHMSYLLFLSKTPMAELVASRPHVKAWWDDISS 204 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,021,603 Number of Sequences: 37544 Number of extensions: 186113 Number of successful extensions: 514 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 499 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 514 length of database: 14,793,348 effective HSP length: 77 effective length of database: 11,902,460 effective search space used: 1011709100 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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