Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30302X
         (490 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890...    54   8e-08
03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631...    54   8e-08
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615...    46   2e-05
01_06_1167 - 35062766-35062870,35063165-35063228,35063647-350637...    33   0.093
09_06_0229 + 21709510-21709532,21710021-21710041,21712386-21713577     27   6.1  
01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443     27   6.1  

>07_03_1580 +
           27888275-27888360,27888755-27888871,27888964-27889045,
           27889710-27889821,27889958-27890071,27890163-27890326
          Length = 224

 Score = 53.6 bits (123), Expect = 8e-08
 Identities = 24/57 (42%), Positives = 35/57 (61%)
 Frame = +3

Query: 48  DVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQGFEQVGKAPAANLPHVLRWYNQIAS 218
           D+ TA GL  L Q+L+ K+YVSG   S+ D++ F  V   P A  P+  RWY+ +A+
Sbjct: 7   DLHTADGLKALEQHLSGKTYVSGNAISKDDIKVFAAVPSKPGAEFPNAARWYDTVAA 63



 Score = 39.9 bits (89), Expect = 0.001
 Identities = 17/27 (62%), Positives = 20/27 (74%)
 Frame = +2

Query: 410 KKSKKPALIAKSSILLDVQPWDDDTDM 490
           K S K     KSS+LLDV+PWDD+TDM
Sbjct: 125 KASSKKKESGKSSVLLDVKPWDDETDM 151


>03_04_0016 +
           16461542-16461566,16462701-16462732,16463015-16463100,
           16463189-16463305,16463399-16463474,16463695-16463818,
           16464482-16464595,16464700-16464947
          Length = 273

 Score = 53.6 bits (123), Expect = 8e-08
 Identities = 23/61 (37%), Positives = 39/61 (63%)
 Frame = +3

Query: 36  MAVGDVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQGFEQVGKAPAANLPHVLRWYNQIA 215
           + + +V +  GL  L++YL  +SY+SGY  S+ D+  F  +  APAA+  +V RWY+ I+
Sbjct: 22  ITLSNVNSEAGLQKLDEYLLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHIS 81

Query: 216 S 218
           +
Sbjct: 82  A 82



 Score = 39.1 bits (87), Expect = 0.002
 Identities = 17/27 (62%), Positives = 20/27 (74%)
 Frame = +2

Query: 410 KKSKKPALIAKSSILLDVQPWDDDTDM 490
           K S K     KSS+LLDV+PWDD+TDM
Sbjct: 146 KASGKKKESGKSSVLLDVKPWDDETDM 172


>07_03_1260 -
           25260872-25261101,25261199-25261312,25261473-25261596,
           25261755-25261839,25261917-25262033,25262122-25262207
          Length = 251

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 19/55 (34%), Positives = 32/55 (58%)
 Frame = +3

Query: 48  DVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQGFEQVGKAPAANLPHVLRWYNQI 212
           +V +  GL  L++YL  +SY+SGY  S  D+  +     AP+++  +V RW+  I
Sbjct: 7   NVSSEAGLKKLDEYLLTRSYISGYQASNDDLAVYSAFSTAPSSSYTNVARWFTHI 61



 Score = 39.1 bits (87), Expect = 0.002
 Identities = 17/27 (62%), Positives = 20/27 (74%)
 Frame = +2

Query: 410 KKSKKPALIAKSSILLDVQPWDDDTDM 490
           K S K     KSS+LLDV+PWDD+TDM
Sbjct: 130 KASGKKKESGKSSVLLDVKPWDDETDM 156


>01_06_1167 -
           35062766-35062870,35063165-35063228,35063647-35063738,
           35064137-35064205,35064322-35064412,35064509-35064732,
           35065064-35065180,35065583-35065651,35066172-35066237,
           35066335-35066505,35066581-35066661,35067620-35067700
          Length = 409

 Score = 33.5 bits (73), Expect = 0.093
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 9/57 (15%)
 Frame = +3

Query: 69  LNDLNQYLAEKSYV--SGYTPSQADVQGFEQV-------GKAPAANLPHVLRWYNQI 212
           L +LNQ L++KS +  +G+ PS AD+  F  +       G+      PHVLRW + I
Sbjct: 76  LGNLNQDLSQKSVLLGNGFKPSVADIVVFATIQVFVSHLGENELQKYPHVLRWMDYI 132


>09_06_0229 + 21709510-21709532,21710021-21710041,21712386-21713577
          Length = 411

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 20/59 (33%), Positives = 26/59 (44%)
 Frame = +3

Query: 24  LKETMAVGDVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQGFEQVGKAPAANLPHVLRW 200
           L+E +A  + K A G+       A     S  TP  ADV     +   PAA+LP   RW
Sbjct: 24  LREMVAAAEAKAAIGVATPTPTAAPCG--STTTPRDADVDDKMTIVGHPAASLPLETRW 80


>01_07_0080 - 40955222-40955676,40956123-40956171,40956282-40956443
          Length = 221

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
 Frame = +3

Query: 60  AQGLNDLNQYLAEKSYVSGYTPSQADVQGFEQV---GKAPAANL----PHVLRWYNQIAS 218
           AQ L+  + +LA   Y++G   S AD      +    K P A L    PHV  W++ I+S
Sbjct: 145 AQVLDVYDAHLAGSRYLAGNRFSLADANHMSYLLFLSKTPMAELVASRPHVKAWWDDISS 204


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,021,603
Number of Sequences: 37544
Number of extensions: 186113
Number of successful extensions: 514
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)