Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30302X
         (490 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)              81   4e-16
SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   3e-07
SB_6056| Best HMM Match : zf-C3HC4 (HMM E-Value=2.4e-14)               27   8.3  
SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0)                    27   8.3  

>SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 225

 Score = 81.4 bits (192), Expect = 4e-16
 Identities = 35/62 (56%), Positives = 43/62 (69%)
 Frame = +3

Query: 36  MAVGDVKTAQGLNDLNQYLAEKSYVSGYTPSQADVQGFEQVGKAPAANLPHVLRWYNQIA 215
           M  GD+K+  GL+ LN +L E+SY+ GY PSQAD   FE +  AP A+LPH LRWYN I 
Sbjct: 1   MGFGDLKSQAGLSALNTFLTERSYIEGYVPSQADAVVFEALKSAPPASLPHALRWYNHIV 60

Query: 216 SY 221
           SY
Sbjct: 61  SY 62



 Score = 50.4 bits (115), Expect = 8e-07
 Identities = 24/53 (45%), Positives = 31/53 (58%)
 Frame = +2

Query: 332 LFGSGDXXXXXXXXXXXXXXXXXXXDKKSKKPALIAKSSILLDVQPWDDDTDM 490
           LFGS D                   +KK+KK  +IAKS+I+LDV+PWDD+TDM
Sbjct: 103 LFGSDDEEEEKEAARIRQERLKAYEEKKAKKKPVIAKSNIMLDVKPWDDETDM 155


>SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 22/35 (62%), Positives = 24/35 (68%)
 Frame = +3

Query: 117 YTPSQADVQGFEQVGKAPAANLPHVLRWYNQIASY 221
           Y PSQAD   FE +  AP A+LPH LRWYN I SY
Sbjct: 2   YVPSQADAVVFEALKSAPPASLPHALRWYNHIVSY 36


>SB_6056| Best HMM Match : zf-C3HC4 (HMM E-Value=2.4e-14)
          Length = 270

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 472 PWLDIKENRGLGNESWFLRLLVSIC 398
           P L+ K+NRGLGNE     L +S+C
Sbjct: 113 PELNPKDNRGLGNEVPETTLELSLC 137


>SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1636

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +3

Query: 69  LNDLNQYLAEKSYVSGYTPSQADVQ 143
           +N L + L EKS+  GY+P+ +DVQ
Sbjct: 62  VNKLPKGLIEKSWNFGYSPNTSDVQ 86


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,307,238
Number of Sequences: 59808
Number of extensions: 200937
Number of successful extensions: 377
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)