Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30301
         (766 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      51   9e-07
SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      50   2e-06
SB_55237| Best HMM Match : Serpin (HMM E-Value=0)                      46   3e-05
SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2)                       30   2.3  
SB_27848| Best HMM Match : zf-C2H2 (HMM E-Value=1.49995e-41)           29   4.1  
SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)                 29   5.4  
SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.4  
SB_29796| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-08)                 29   5.4  
SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20)         28   9.5  
SB_24891| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_11238| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_48263| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_30045| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_29987| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 51.2 bits (117), Expect = 9e-07
 Identities = 21/61 (34%), Positives = 33/61 (54%)
 Frame = +1

Query: 511 DLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMMYKRGDYK 690
           DL+ P   +  T   LVNAIYFKG W   F +  +   +F  +    ++V MM+++  +K
Sbjct: 110 DLIAPGVFNMLTRLTLVNAIYFKGMWDKPFKKEHSHSSEFRTTSSNEVEVEMMFQKSKFK 169

Query: 691 Y 693
           Y
Sbjct: 170 Y 170



 Score = 32.7 bits (71), Expect = 0.33
 Identities = 13/54 (24%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +2

Query: 332 ELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDFSKNTVAA-KSINDWVEE 490
           E+ +AN +++     + + F  + +  +++D+  +D+  +   A K +N WVEE
Sbjct: 49  EMSIANNLFLQKDFSILKEFTDICQKYYDADISLVDYKTDFEGARKHVNQWVEE 102


>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 22/67 (32%), Positives = 36/67 (53%)
 Frame = +1

Query: 511 DLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYVSKDKTIKVPMMYKRGDYK 690
           +L+     +  T   LVNA+YFKG+W   F+   T    F  +  + I+V  MY+  +++
Sbjct: 147 NLIPEGMFNKDTILCLVNAVYFKGSWMKHFNRNATQSGKFKTTPSQEIQVQFMYQSSEFR 206

Query: 691 YGESADL 711
           Y ES+ L
Sbjct: 207 YLESSTL 213



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 21/82 (25%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
 Frame = +2

Query: 248 ESFGFPDDDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGKLDENFAVVSRDVFNSDV 427
           ++F FP D   +     ++ +  +  G ++ MAN+++   G ++ E F   S++ F++++
Sbjct: 58  KTFHFPTDVPEKFHDFLQALNASNSDGNQILMANRLFAQMGFEILEEFKKASKESFSAEM 117

Query: 428 QNIDFSKNTVAAK-SINDWVEE 490
             +D+ KN+  A+ ++N WVE+
Sbjct: 118 ALVDYVKNSNGARDTVNRWVEQ 139


>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 363

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
 Frame = +1

Query: 511 DLVNPDSLSSATAAVLVNAIYFKGAWSSKFDERLTSDRDFYV--SKDKTIKVPMMYKRGD 684
           +L+    ++S T  ++VNA+YFKG W  +F E  T    F+V  S +  I+V MM ++  
Sbjct: 115 ELIPHGVINSLTRLIIVNAVYFKGVWKKEFGEENTFHAAFFVPESHESKIEVEMMTRKMK 174

Query: 685 YKYGESADL 711
             +   AD+
Sbjct: 175 VNFYYDADI 183



 Score = 39.1 bits (87), Expect = 0.004
 Identities = 17/54 (31%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
 Frame = +2

Query: 332 ELKMANKVYVHDGGKLDENFAVVSRDVFNSDVQNIDF-SKNTVAAKSINDWVEE 490
           E+++ NK++ HD  ++ E F   +R+ ++S++  +DF +K   A K +N WV +
Sbjct: 54  EIQLVNKIWGHDEFEILEEFLHGTREFYHSEMAQVDFVNKAFDARKEVNAWVHQ 107


>SB_5257| Best HMM Match : SlyX (HMM E-Value=2.2)
          Length = 641

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 21/83 (25%), Positives = 41/83 (49%)
 Frame = +2

Query: 242 AFESFGFPDDDAIRTEFASKSRDLRSIKGVELKMANKVYVHDGGKLDENFAVVSRDVFNS 421
           AF  F F  DD +  E  S+++D  +++    K    +      K +E+  + S  +F+ 
Sbjct: 420 AFPRFYFLSDDEL-LEILSQTKDPTAVQPHLRKCFENIAKL---KFEEDLRISS--MFSG 473

Query: 422 DVQNIDFSKNTVAAKSINDWVEE 490
           + +N+DFS +     ++ DW+ E
Sbjct: 474 EGENVDFSTDLYPTGNVEDWLLE 496


>SB_27848| Best HMM Match : zf-C2H2 (HMM E-Value=1.49995e-41)
          Length = 257

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +3

Query: 384 RILQSFPGTSSIRTSKTLISRRIQSQLS 467
           R+  SFPG S      TL++R  QSQ+S
Sbjct: 65  RLYDSFPGASRSEAESTLLARMRQSQVS 92


>SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)
          Length = 595

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/56 (30%), Positives = 31/56 (55%)
 Frame = +3

Query: 60  AMAAVTNLSNVLKNGNDNFTARMFTEVVKNNPGKSVVLSAFSVLPPLAQLALASDG 227
           +MAAV   + +L+  +      + + ++KNN  +S+   AF+ L  L  L L+S+G
Sbjct: 36  SMAAVCRPAGLLEPDHFALPVAVESLILKNNSIRSIAKGAFNGLDKLLTLDLSSNG 91


>SB_4415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 640

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -3

Query: 68  CHCRDGDSKQTNDCL 24
           CHCRDG+S Q N+ +
Sbjct: 336 CHCRDGESVQVNNAM 350


>SB_29796| Best HMM Match : 7tm_1 (HMM E-Value=1.6e-08)
          Length = 362

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -1

Query: 514 NPNAVIGIFFYPIVNRLSCDCILREINVLDVRIED 410
           NP+    I+  P +NR    C  R + +LD+ I D
Sbjct: 290 NPSRFFNIYGEPRINRNKNKCSTRSVKILDIAILD 324


>SB_43620| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1680

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +3

Query: 120 ARMFTEVVKNNPGKSVVLSAFSVLPPLAQLALASDGETHEELLKASAS 263
           +R   +   +N GK+V L      PP+AQ  + S   T +++LKA+A+
Sbjct: 481 SRFGVQYYNSNNGKNVALVK---QPPVAQTTVPSQETTAQQMLKAAAA 525


>SB_27683| Best HMM Match : Exo_endo_phos (HMM E-Value=1.5e-20)
          Length = 672

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 225 HQKLKLTEREEAAPKMPRGQRFSL 154
           HQ L + E + ++PK PR  +F L
Sbjct: 56  HQNLSINEMDSSSPKRPRQHQFGL 79


>SB_24891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 345

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 225 HQKLKLTEREEAAPKMPRGQRFSL 154
           HQ L + E + ++PK PR  +F L
Sbjct: 21  HQNLSINEMDSSSPKRPRQHQFGL 44


>SB_11238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 225 HQKLKLTEREEAAPKMPRGQRFSL 154
           HQ L + E + ++PK PR  +F L
Sbjct: 50  HQNLSINEMDSSSPKRPRQHQFGL 73


>SB_48263| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 225 HQKLKLTEREEAAPKMPRGQRFSL 154
           HQ L + E + ++PK PR  +F L
Sbjct: 21  HQNLSINEMDSSSPKRPRQHQFGL 44


>SB_30045| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 699 LSIFIIAAFIHHGYFDCF 646
           LS++++   +HH YF CF
Sbjct: 298 LSLYVVVVTVHHHYFFCF 315


>SB_29987| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 118

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 225 HQKLKLTEREEAAPKMPRGQRFSL 154
           HQ L + E + ++PK PR  +F L
Sbjct: 7   HQNLSINEMDSSSPKCPRQHQFGL 30


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,859,428
Number of Sequences: 59808
Number of extensions: 430870
Number of successful extensions: 1192
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)