Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30299
(767 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0440 - 10273032-10273259,10273423-10273461,10273875-102741... 31 1.0
06_03_1235 + 28593906-28594412,28594670-28594756,28594890-285950... 30 1.8
02_05_0023 + 25138709-25138823,25139013-25139197,25139268-251393... 29 3.1
06_03_0196 - 17784747-17784833,17786061-17786333,17787982-177881... 29 4.1
01_07_0036 + 40647046-40647100,40647120-40647571,40648135-406482... 29 5.4
11_06_0313 + 22306497-22308938 28 7.1
09_04_0375 - 17055024-17055956,17056045-17056296 28 7.1
10_08_0392 + 17500748-17500877,17501006-17501280,17501321-175013... 28 9.4
02_04_0577 - 24011542-24011906,24012285-24012385,24013029-240132... 28 9.4
02_04_0061 + 19361562-19363130 28 9.4
01_01_0098 + 744582-745380,746107-746130,746500-747569 28 9.4
>02_02_0440 -
10273032-10273259,10273423-10273461,10273875-10274123,
10274203-10274329,10275009-10275251,10275359-10275457,
10275566-10275681,10275813-10276039,10276164-10276276,
10276402-10276522,10276641-10276855,10277042-10277225,
10277739-10278048,10278155-10278249,10278473-10278485
Length = 792
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Frame = -3
Query: 144 DLWPGQTL--RPEVDNIVYLQSCRRPLSRDDCIHQSQL 37
D+W G+TL P V+N YL+ ++ +R +HQ +L
Sbjct: 456 DVWIGKTLYRMPIVNNATYLELAKQDFNRCQALHQHEL 493
>06_03_1235 +
28593906-28594412,28594670-28594756,28594890-28595027,
28595752-28595771,28595772-28595967,28596104-28596168,
28596299-28596404
Length = 372
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = -3
Query: 654 DTGRVHEPKVHNAVSIHSFRC*LRSTLFRKFGDSLWI 544
+ G+ PK H V+ H FR + + K GD W+
Sbjct: 145 EIGKEKPPKEHAVVAAHQFRWLVSQVTYPKLGDLCWL 181
>02_05_0023 +
25138709-25138823,25139013-25139197,25139268-25139335,
25139729-25140041,25140621-25140962,25140990-25141079
Length = 370
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 598 EAMDRNGIMYFGLMNPPSIWCWNSATGFSPKNFYKI 705
+A+D ++ FGL+N SI N + GF+ FY++
Sbjct: 66 KAIDGQTVILFGLLNGTSIGLLNLSLGFNSIGFYQM 101
>06_03_0196 -
17784747-17784833,17786061-17786333,17787982-17788166,
17788267-17788381
Length = 219
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 598 EAMDRNGIMYFGLMNPPSIWCWNSATGFSPKNFYK 702
+A+D ++ FGL+N SI N + GF+ FY+
Sbjct: 66 KAIDGQTVILFGLLNGTSIGLLNLSLGFNSIGFYQ 100
>01_07_0036 +
40647046-40647100,40647120-40647571,40648135-40648257,
40648407-40648461,40648613-40648722,40649352-40649531,
40650003-40650101,40651182-40651280,40652195-40652289,
40652290-40652378,40652739-40652901,40653299-40653404,
40655647-40655829,40656059-40656286,40656373-40656486
Length = 716
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 444 RPVRYGDRAIPRTPSIKSKDSPSIVNVP 361
+PVR GD A R PS + K P+I P
Sbjct: 100 KPVRMGDAASERKPSSEGKPMPAIAAEP 127
>11_06_0313 + 22306497-22308938
Length = 813
Score = 28.3 bits (60), Expect = 7.1
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Frame = -3
Query: 456 RKRSRPVRYGDRAIPRTPSIKSK------DSPSIVNVPREG*GKK 340
RKR RP R D A P I+SK +PS V +P +G K+
Sbjct: 208 RKRGRPRRVQDGADTSAPPIQSKYNEPVLQTPSAVTLPEDGKRKR 252
>09_04_0375 - 17055024-17055956,17056045-17056296
Length = 394
Score = 28.3 bits (60), Expect = 7.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 348 GKKYLLVTLHERSLATSKTSSPNP 277
G+K LL +H R +++ T+SP+P
Sbjct: 104 GEKQLLTEIHRRKTSSASTASPSP 127
>10_08_0392 +
17500748-17500877,17501006-17501280,17501321-17501388,
17501516-17501632,17501802-17501943,17502622-17502912,
17503507-17503650
Length = 388
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 595 AEAMDRNGIMYFGLMNPPSIWCWNSATGFSPKNFYK 702
A+ +D ++ FGL+N SI N GF+ FY+
Sbjct: 86 AKPIDAQTVISFGLLNGISIGLLNLCLGFNSVGFYQ 121
>02_04_0577 -
24011542-24011906,24012285-24012385,24013029-24013287,
24014176-24014264,24015331-24015419
Length = 300
Score = 27.9 bits (59), Expect = 9.4
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Frame = -3
Query: 456 RKRSRPVRYGDRAIPRTPSIKSKDSPSIVNV-PREG*GKKYLLVTLHERSLATSKTSSPN 280
R RSR RY R+ R+P + S + PR+ K+ + A S + SP
Sbjct: 118 RSRSRSPRYRGRSRSRSPRYRRSPSYGRRSYSPRDRSPKRRSYSRSPPPARARSYSRSPP 177
Query: 279 PDTSATYTMC-*RNLPGTQVL 220
P +A + C RN+ G +L
Sbjct: 178 PPRAALFACCGCRNIRGLHML 198
>02_04_0061 + 19361562-19363130
Length = 522
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -1
Query: 629 KYIMPFRSIASAADCEVRSSGN 564
K +PF SAADCEVR + N
Sbjct: 378 KEFLPFEHSPSAADCEVRCARN 399
>01_01_0098 + 744582-745380,746107-746130,746500-747569
Length = 630
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 5/37 (13%)
Frame = +2
Query: 254 IVYVADVSGFGLLVLD-VANDRSW----RVTNKYFFP 349
I Y +DV FG+LVL+ V+ RSW + N+ +FP
Sbjct: 516 ISYKSDVYSFGMLVLEMVSGRRSWDPSIKNQNEVYFP 552
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,876,855
Number of Sequences: 37544
Number of extensions: 472554
Number of successful extensions: 1236
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1235
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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