Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30299
         (767 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20781| Best HMM Match : zf-CCHC (HMM E-Value=0.0016)                35   0.083
SB_3684| Best HMM Match : fn3 (HMM E-Value=8e-11)                      33   0.34 
SB_46289| Best HMM Match : DUF1690 (HMM E-Value=0.32)                  28   7.2  
SB_57594| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_37419| Best HMM Match : Pox_A32 (HMM E-Value=0.24)                  28   9.5  
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)              28   9.5  
SB_13721| Best HMM Match : C1_1 (HMM E-Value=1.1)                      28   9.5  

>SB_20781| Best HMM Match : zf-CCHC (HMM E-Value=0.0016)
          Length = 391

 Score = 34.7 bits (76), Expect = 0.083
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 102 YCPPQVLAFDLATDRLVYRHVVNISSYTSPSLFITP-VVDVRPEFPGDCANTSYTSPTCL 278
           Y  P +L      D   Y  V  + +YT+PS+  +P V D+   +P  C +T YT+P+ L
Sbjct: 275 YMAPSILTSPKVADIGSYWPVKCVYTYTAPSILTSPKVADIGSYWPVKCVHT-YTAPSIL 333



 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +3

Query: 153 YRHVVNISSYTSPSLFITP-VVDVRPEFPGDCANTSYTSPTCL 278
           Y  V  + +YT+PS+F +P V D+   +P  C  T YT+P+ L
Sbjct: 214 YWPVKCVYTYTAPSIFTSPKVADIGFYWPVKCVYT-YTAPSIL 255



 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +3

Query: 102 YCPPQVLAFDLATDRLVYRHVVNISSYTSPSLFITP-VVDVRPEFPGDCANTSYTSPTCL 278
           Y  P +       D   Y  V  + +YT+PS+  +P V D+   +P  C  T Y +P+ L
Sbjct: 223 YTAPSIFTSPKVADIGFYWPVKCVYTYTAPSILTSPKVADIGSYWPVKCVYT-YMAPSIL 281


>SB_3684| Best HMM Match : fn3 (HMM E-Value=8e-11)
          Length = 862

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -2

Query: 760 YYSPLLAH*QIAGFLCQQRSCKSSWEKIPLLNSSTRY 650
           +Y P +   ++ GFL Q R+  SSW+++ L  + TR+
Sbjct: 482 WYGPYVLPGKLTGFLVQWRNTYSSWQRVQLPANQTRF 518


>SB_46289| Best HMM Match : DUF1690 (HMM E-Value=0.32)
          Length = 947

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -3

Query: 369 NVPREG*GKKY--LLVTLHERSLATSKTSSPNP 277
           ++PR G G  Y  +  T+   S ATS +SSP+P
Sbjct: 854 SIPRSGSGNSYSVMATTIPTSSSATSDSSSPHP 886


>SB_57594| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1386

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 302 VANDRSWRVTNKYFFPYPSRGTFTID 379
           +A  + WR TN++F    SR TFT D
Sbjct: 8   LAAKQRWRKTNEFFSENTSRATFTKD 33


>SB_37419| Best HMM Match : Pox_A32 (HMM E-Value=0.24)
          Length = 1497

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = +2

Query: 284 GLLVLDVANDRSW-RVTNKYFFPYPSRGTFTIDGESFDLMDGVLGMALSPYRT-GRD--R 451
           GLL+L V    +W R + K+ +P       TIDG       G+L + + PY    RD  +
Sbjct: 807 GLLLLFVEPYTAWARDSEKFMYPDIKSVRVTIDGVPNKSKSGLLLLFVEPYTAWARDSEK 866

Query: 452 FLY 460
           F+Y
Sbjct: 867 FMY 869


>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
          Length = 2506

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = -3

Query: 423  RAIPRTPSIKSKDSPSIVNVPREG*GKKYLLVTLHERSLATSKTSSPNPDT 271
            R+IP +P   S  S S++  PR+    + L   L E  + T    SP PDT
Sbjct: 2339 RSIPSSPPFASPKSSSVMQQPRKM-SSRSLATALSEGVIVTPLQPSP-PDT 2387


>SB_13721| Best HMM Match : C1_1 (HMM E-Value=1.1)
          Length = 256

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 302 VANDRSWRVTNKYFFPYPSRGTFTID 379
           +A  + WR TN++F    SR TFT D
Sbjct: 8   LAAKQRWRKTNEFFSENTSRATFTKD 33


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,222,046
Number of Sequences: 59808
Number of extensions: 550672
Number of successful extensions: 1167
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1167
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)