BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30299 (767 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U00040-2|AAA50667.4| 366|Caenorhabditis elegans Hypothetical pr... 31 0.90 Z49909-2|CAB60994.1| 375|Caenorhabditis elegans Hypothetical pr... 28 6.4 AF058329-1|AAD20727.1| 375|Caenorhabditis elegans unknown protein. 28 6.4 Z68753-3|CAA92988.3| 984|Caenorhabditis elegans Hypothetical pr... 28 8.4 >U00040-2|AAA50667.4| 366|Caenorhabditis elegans Hypothetical protein C18H2.2 protein. Length = 366 Score = 31.1 bits (67), Expect = 0.90 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%) Frame = -1 Query: 746 FSPLANCRVSLSTAIL*KFLGENPVAEFQHQIL--GGFMSPKYIMPFRSIASAADCEVRS 573 F+ L N RV + FL + PV Q L F + + F++ A+ V + Sbjct: 106 FTSLLNLRVVILVHQTRNFLSKQPVQRTMSQFLMRKTFSNAGLVKKFQTYANDTALTVNN 165 Query: 572 SGNSAIACGST 540 S NSA +CG + Sbjct: 166 SSNSANSCGDS 176 >Z49909-2|CAB60994.1| 375|Caenorhabditis elegans Hypothetical protein C14A4.2 protein. Length = 375 Score = 28.3 bits (60), Expect = 6.4 Identities = 14/38 (36%), Positives = 18/38 (47%) Frame = +3 Query: 39 VAIDECNRLWIMDAGKIGDTQYCPPQVLAFDLATDRLV 152 VAID+ N LW K D Y PP L + R++ Sbjct: 233 VAIDDANSLWGKTLVKRADRTYAPPSDLTLVVHYRRMI 270 >AF058329-1|AAD20727.1| 375|Caenorhabditis elegans unknown protein. Length = 375 Score = 28.3 bits (60), Expect = 6.4 Identities = 14/38 (36%), Positives = 18/38 (47%) Frame = +3 Query: 39 VAIDECNRLWIMDAGKIGDTQYCPPQVLAFDLATDRLV 152 VAID+ N LW K D Y PP L + R++ Sbjct: 233 VAIDDANSLWGKTLVKRADRTYAPPSDLTLVVHYRRMI 270 >Z68753-3|CAA92988.3| 984|Caenorhabditis elegans Hypothetical protein ZC518.2 protein. Length = 984 Score = 27.9 bits (59), Expect = 8.4 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%) Frame = -2 Query: 505 FSFNYVFCCRC*RMEVEKTVTSCAIWRQSHT-KNSIHQIKRFS-VNSKCASRRIGEE 341 F FN + E+ K T C ++ +N IHQ+KRF ++ +R++G E Sbjct: 590 FMFNTQYADLATLSEIAKFSTGCVYHFPNYNYRNDIHQVKRFERTLTRYLTRKLGFE 646 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,523,718 Number of Sequences: 27780 Number of extensions: 402432 Number of successful extensions: 961 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 933 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 961 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 1840614650 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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