Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30299
         (767 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00040-2|AAA50667.4|  366|Caenorhabditis elegans Hypothetical pr...    31   0.90 
Z49909-2|CAB60994.1|  375|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AF058329-1|AAD20727.1|  375|Caenorhabditis elegans unknown protein.    28   6.4  
Z68753-3|CAA92988.3|  984|Caenorhabditis elegans Hypothetical pr...    28   8.4  

>U00040-2|AAA50667.4|  366|Caenorhabditis elegans Hypothetical
           protein C18H2.2 protein.
          Length = 366

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = -1

Query: 746 FSPLANCRVSLSTAIL*KFLGENPVAEFQHQIL--GGFMSPKYIMPFRSIASAADCEVRS 573
           F+ L N RV +       FL + PV     Q L    F +   +  F++ A+     V +
Sbjct: 106 FTSLLNLRVVILVHQTRNFLSKQPVQRTMSQFLMRKTFSNAGLVKKFQTYANDTALTVNN 165

Query: 572 SGNSAIACGST 540
           S NSA +CG +
Sbjct: 166 SSNSANSCGDS 176


>Z49909-2|CAB60994.1|  375|Caenorhabditis elegans Hypothetical
           protein C14A4.2 protein.
          Length = 375

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +3

Query: 39  VAIDECNRLWIMDAGKIGDTQYCPPQVLAFDLATDRLV 152
           VAID+ N LW     K  D  Y PP  L   +   R++
Sbjct: 233 VAIDDANSLWGKTLVKRADRTYAPPSDLTLVVHYRRMI 270


>AF058329-1|AAD20727.1|  375|Caenorhabditis elegans unknown protein.
          Length = 375

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +3

Query: 39  VAIDECNRLWIMDAGKIGDTQYCPPQVLAFDLATDRLV 152
           VAID+ N LW     K  D  Y PP  L   +   R++
Sbjct: 233 VAIDDANSLWGKTLVKRADRTYAPPSDLTLVVHYRRMI 270


>Z68753-3|CAA92988.3|  984|Caenorhabditis elegans Hypothetical
           protein ZC518.2 protein.
          Length = 984

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -2

Query: 505 FSFNYVFCCRC*RMEVEKTVTSCAIWRQSHT-KNSIHQIKRFS-VNSKCASRRIGEE 341
           F FN  +       E+ K  T C     ++  +N IHQ+KRF    ++  +R++G E
Sbjct: 590 FMFNTQYADLATLSEIAKFSTGCVYHFPNYNYRNDIHQVKRFERTLTRYLTRKLGFE 646


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,523,718
Number of Sequences: 27780
Number of extensions: 402432
Number of successful extensions: 961
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)