Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30299
         (767 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48970.1 68414.m05489 eukaryotic translation initiation facto...    30   2.0  
At4g21630.1 68417.m03135 subtilase family protein contains simil...    29   2.6  
At3g11900.1 68416.m01459 amino acid transporter family protein l...    28   6.0  

>At1g48970.1 68414.m05489 eukaryotic translation initiation factor
           2B family protein / eIF-2B family protein similar to
           guanine nucleotide exchange factor, eIF-2B, delta
           subunit [Mus musculus] GI:529428; contains Pfam profile
           PF01008: Initiation factor 2 subunit family
          Length = 756

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +1

Query: 544 DPQAIAEFPEERTSQSAAEAMDRN-GIMYFGLM--NPPSIWCWNSATGFSPKNFYKIA 708
           DP A+A  P  RT+   ++ MD N  + +  LM  + PS +     + +   NF+ ++
Sbjct: 681 DPDAVANIPSFRTNAKHSKTMDNNKNLQFLNLMYDSTPSEYISMIVSDYGMSNFHLVS 738


>At4g21630.1 68417.m03135 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 from [Oryza
           sativa]
          Length = 772

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = -3

Query: 717 FVNSDLVKVLGRKSRC*IPAPDTGRVHEPKV 625
           +++S + +VLG+K++C IP P    ++ P +
Sbjct: 646 YIDSSISRVLGKKTKCTIPKPSILDINLPSI 676


>At3g11900.1 68416.m01459 amino acid transporter family protein low
           similarity to proton/amino acid transporter 1 [Mus
           musculus] GI:21908024; belongs to INTERPRO:IPR002422
           amino acid/polyamine transporter, family II
          Length = 432

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +1

Query: 139 QIDLCIGMSSTYQVTLHPL 195
           QI LC+G++ T+ + +HPL
Sbjct: 298 QIGLCVGLTFTFPIMVHPL 316


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,629,055
Number of Sequences: 28952
Number of extensions: 381406
Number of successful extensions: 967
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)