Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30298
         (396 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5K6H1 Cluster: Putative uncharacterized protein; n=1; ...    37   0.12 
UniRef50_Q5KTL8 Cluster: Putative uncharacterized protein; n=1; ...    35   0.50 
UniRef50_UPI000155DCFE Cluster: PREDICTED: hypothetical protein;...    34   0.87 
UniRef50_Q7RIA9 Cluster: Immediate early protein homolog; n=3; P...    33   2.7  
UniRef50_UPI000023D42A Cluster: hypothetical protein FG10161.1; ...    32   3.5  
UniRef50_Q9GRY8 Cluster: Putative uncharacterized protein; n=3; ...    32   3.5  
UniRef50_A7DBQ1 Cluster: RNA-binding S4 domain protein; n=3; Alp...    31   8.1  

>UniRef50_A5K6H1 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium vivax|Rep: Putative uncharacterized protein -
            Plasmodium vivax
          Length = 3077

 Score = 37.1 bits (82), Expect = 0.12
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = -3

Query: 247  SPGLCSPGFC*PGHCSRGLC 188
            SPG CSPG C PG+CS+G C
Sbjct: 1124 SPGNCSPGNCSPGNCSQGNC 1143



 Score = 35.9 bits (79), Expect = 0.28
 Identities = 14/20 (70%), Positives = 15/20 (75%)
 Frame = -3

Query: 247  SPGLCSPGFC*PGHCSRGLC 188
            SPG CSPG C PG+CS G C
Sbjct: 1119 SPGNCSPGNCSPGNCSPGNC 1138



 Score = 33.5 bits (73), Expect = 1.5
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = -3

Query: 247  SPGLCSPGFC*PGHCSRGLC 188
            SPG CS G C  GHCS+G C
Sbjct: 1134 SPGNCSQGNCAQGHCSQGHC 1153



 Score = 32.7 bits (71), Expect = 2.7
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -3

Query: 247  SPGLCSPGFC*PGHCSRGLC 188
            SPG CSPG C  G+C++G C
Sbjct: 1129 SPGNCSPGNCSQGNCAQGHC 1148


>UniRef50_Q5KTL8 Cluster: Putative uncharacterized protein; n=1;
           Bombyx mori|Rep: Putative uncharacterized protein -
           Bombyx mori (Silk moth)
          Length = 173

 Score = 35.1 bits (77), Expect = 0.50
 Identities = 14/15 (93%), Positives = 15/15 (100%)
 Frame = +3

Query: 255 TMSTSARDGCLYRNE 299
           TMSTSARDGCLYRN+
Sbjct: 5   TMSTSARDGCLYRND 19


>UniRef50_UPI000155DCFE Cluster: PREDICTED: hypothetical protein;
           n=1; Equus caballus|Rep: PREDICTED: hypothetical protein
           - Equus caballus
          Length = 381

 Score = 34.3 bits (75), Expect = 0.87
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +3

Query: 153 PERAL--SRQMYHKHRPREQWPG*QKPGEQRPGDRVTMSTSARDGCLYRNEI 302
           P+ AL   R +   H PR   P  + PGE+RP  + T S+    GC+Y+  +
Sbjct: 254 PQAALLQKRGLLPAHPPRR--PSGRGPGEERPSHQTTTSSRRERGCVYQRSV 303


>UniRef50_Q7RIA9 Cluster: Immediate early protein homolog; n=3;
            Plasmodium (Vinckeia)|Rep: Immediate early protein
            homolog - Plasmodium yoelii yoelii
          Length = 1545

 Score = 32.7 bits (71), Expect = 2.7
 Identities = 19/82 (23%), Positives = 35/82 (42%)
 Frame = +3

Query: 12   TTGQRKSTTKQKLRKETKQINTCRKPLCRQMYHEHXXXXXXXXXXXLPERALSRQMYHKH 191
            TT Q+    +  +++ T Q    ++   +Q   +              ++  S+Q   + 
Sbjct: 1310 TTSQQTPDQQTTVQQTTSQQTPGQQTTSQQTSGQQTTSQQTTSQQTPGQQTTSQQTTSQQ 1369

Query: 192  RPREQWPG*QKPGEQRPGDRVT 257
             P +Q PG Q PG+Q PG + T
Sbjct: 1370 TPGQQTPGQQTPGQQTPGQQTT 1391


>UniRef50_UPI000023D42A Cluster: hypothetical protein FG10161.1;
           n=1; Gibberella zeae PH-1|Rep: hypothetical protein
           FG10161.1 - Gibberella zeae PH-1
          Length = 732

 Score = 32.3 bits (70), Expect = 3.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 195 PREQWPG*QKPGEQRPGDRVTMSTSAR 275
           P+++WPG    GE  PGD +T S S +
Sbjct: 379 PQDRWPGPSLSGEDAPGDYITTSESGQ 405


>UniRef50_Q9GRY8 Cluster: Putative uncharacterized protein; n=3;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 417

 Score = 32.3 bits (70), Expect = 3.5
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
 Frame = +3

Query: 12  TTGQRKSTTKQKLRKETKQINTCRKPL-CRQMYHEHXXXXXXXXXXXLPERALSRQMYHK 188
           TT + + T+  +  K+T     CRK L  ++ Y EH             +  L R     
Sbjct: 44  TTQKFRQTSNGRTMKQTWTCGVCRKELSSKRSYTEHMNIHNKSRPFQSSQMTLHRHKLRN 103

Query: 189 HRPREQW 209
           H P+ +W
Sbjct: 104 HTPKAEW 110


>UniRef50_A7DBQ1 Cluster: RNA-binding S4 domain protein; n=3;
           Alphaproteobacteria|Rep: RNA-binding S4 domain protein -
           Methylobacterium extorquens PA1
          Length = 669

 Score = 31.1 bits (67), Expect = 8.1
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 156 ERALSRQMYHKHRPREQWPG*QKPGEQRPGDRVTMSTSARD 278
           ER+  R    + RPR+  PG  +P E RP         ARD
Sbjct: 417 ERSAPRDRAREDRPRQDRPGQDRPREDRPRSEGPRENRARD 457


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 316,239,912
Number of Sequences: 1657284
Number of extensions: 5159708
Number of successful extensions: 15094
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15035
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16503508437
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)