Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30298
         (396 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0321 + 2328932-2328963,2329084-2329243,2329388-2329576,233...    27   5.5  
07_03_1779 - 29458889-29459249,29461107-29461283,29461374-294615...    26   9.6  

>06_01_0321 +
           2328932-2328963,2329084-2329243,2329388-2329576,
           2330406-2330517,2331395-2331474,2332022-2332132,
           2332580-2332666,2332979-2333260,2333804-2333965
          Length = 404

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 207 WPG*QKPGEQRPGDRVTMSTSARDGCLY 290
           W G  K GE+ PG +  M+T  +DG ++
Sbjct: 43  WMG-SKDGEENPGKKKHMATHEKDGVVF 69


>07_03_1779 -
           29458889-29459249,29461107-29461283,29461374-29461573,
           29461673-29462752
          Length = 605

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 230 RTKTGRSSDDEHVRT*RVPLS 292
           RT T  SS D+H+R   +P+S
Sbjct: 188 RTNTNTSSSDQHLRLINIPMS 208


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,631,672
Number of Sequences: 37544
Number of extensions: 146043
Number of successful extensions: 386
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)