Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30298
(396 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28441| Best HMM Match : GLTT (HMM E-Value=3.7e-28) 29 1.0
SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_39168| Best HMM Match : Cgr1 (HMM E-Value=0.79) 27 4.2
SB_31052| Best HMM Match : 7tm_1 (HMM E-Value=5.8e-14) 27 4.2
SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.5
SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_10566| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_10748| Best HMM Match : GETHR (HMM E-Value=1.5) 27 7.3
SB_44729| Best HMM Match : SET (HMM E-Value=0) 26 9.6
SB_754| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.6
>SB_28441| Best HMM Match : GLTT (HMM E-Value=3.7e-28)
Length = 447
Score = 29.5 bits (63), Expect = 1.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 241 GLCSPGFC*PGHCSRGLCLWYIC 173
G+C+ G C G C+ G+C IC
Sbjct: 391 GICTTGICTTGICTTGICTTGIC 413
Score = 29.5 bits (63), Expect = 1.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 241 GLCSPGFC*PGHCSRGLCLWYIC 173
G+C+ G C G C+ G+C IC
Sbjct: 396 GICTTGICTTGICTTGICTTGIC 418
Score = 29.5 bits (63), Expect = 1.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 241 GLCSPGFC*PGHCSRGLCLWYIC 173
G+C+ G C G C+ G+C IC
Sbjct: 401 GICTTGICTTGICTTGICTTGIC 423
>SB_41974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 110
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -2
Query: 380 LHCIYKVLIGAHRDDNAYTADHLET 306
L C+Y LI H DD A TAD +ET
Sbjct: 7 LACVYSALI-LHDDDVAITADKIET 30
>SB_39168| Best HMM Match : Cgr1 (HMM E-Value=0.79)
Length = 358
Score = 27.5 bits (58), Expect = 4.2
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 2 RRDYYRTKKKHNKTEITKRNKTNKYLQETTLSADVPR 112
+R R KK KT + K N+YL E T D+P+
Sbjct: 76 KRAAERILKKAEKTHKQRVEKFNEYLDELTEHYDIPK 112
>SB_31052| Best HMM Match : 7tm_1 (HMM E-Value=5.8e-14)
Length = 283
Score = 27.5 bits (58), Expect = 4.2
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = -1
Query: 264 CSSSLDRPVFVRPA 223
CS S DRPVFV+PA
Sbjct: 270 CSCSRDRPVFVQPA 283
>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3051
Score = 27.1 bits (57), Expect = 5.5
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -3
Query: 274 RADVLIVTRSPGLCSPGFC*PGHCSRGLCLWYICRL 167
R + +V GLC G C G C GLC +C L
Sbjct: 1672 RWSLCLVLCGLGLCCLGLCGLGLCGLGLCGLGLCGL 1707
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3
Query: 241 GLCSPGFC*PGHCSRGLCLWYICRL 167
GLC G C G C GLC +C L
Sbjct: 1688 GLCGLGLCGLGLCGLGLCGLGLCGL 1712
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3
Query: 241 GLCSPGFC*PGHCSRGLCLWYICRL 167
GLC G C G C GLC +C L
Sbjct: 1693 GLCGLGLCGLGLCGLGLCGLGLCGL 1717
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3
Query: 241 GLCSPGFC*PGHCSRGLCLWYICRL 167
GLC G C G C GLC +C L
Sbjct: 1698 GLCGLGLCGLGLCGLGLCGLGLCGL 1722
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3
Query: 241 GLCSPGFC*PGHCSRGLCLWYICRL 167
GLC G C G C GLC +C L
Sbjct: 1703 GLCGLGLCGLGLCGLGLCGLGLCGL 1727
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3
Query: 241 GLCSPGFC*PGHCSRGLCLWYICRL 167
GLC G C G C GLC +C L
Sbjct: 1708 GLCGLGLCGLGLCGLGLCGLGLCGL 1732
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3
Query: 241 GLCSPGFC*PGHCSRGLCLWYICRL 167
GLC G C G C GLC +C L
Sbjct: 1713 GLCGLGLCGLGLCGLGLCGLGLCGL 1737
Score = 27.1 bits (57), Expect = 5.5
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3
Query: 241 GLCSPGFC*PGHCSRGLCLWYICRL 167
GLC G C G C GLC +C L
Sbjct: 1718 GLCGLGLCGLGLCGLGLCGLGLCGL 1742
>SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2480
Score = 26.6 bits (56), Expect = 7.3
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +2
Query: 2 RRDYYRTKKKHNKTEITKRNKTNKYLQET 88
++D TKK+ +T+ TK ++TNK +QET
Sbjct: 1332 KKDVQETKKEVQETK-TKVDETNKEVQET 1359
>SB_10566| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1264
Score = 26.6 bits (56), Expect = 7.3
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +2
Query: 2 RRDYYRTKKKHNKTEITKRNKTNKYLQET 88
++D TKK+ +T+ TK ++TNK +QET
Sbjct: 238 KKDVQETKKEVQETK-TKVDETNKEVQET 265
>SB_10748| Best HMM Match : GETHR (HMM E-Value=1.5)
Length = 126
Score = 26.6 bits (56), Expect = 7.3
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 185 QTQAARTMAGLTKAGRTKTGRSSD 256
+T+ +T G TK G+TK GR+ D
Sbjct: 28 KTKDGKTRDGKTKDGKTKDGRTKD 51
>SB_44729| Best HMM Match : SET (HMM E-Value=0)
Length = 1112
Score = 26.2 bits (55), Expect = 9.6
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = +3
Query: 54 KETKQINTCRKPLCRQMYHE 113
++T + C +PLC + YH+
Sbjct: 463 RQTGDVKACSQPLCSKFYHK 482
>SB_754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 123
Score = 26.2 bits (55), Expect = 9.6
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +1
Query: 172 GRCTTNTGRANNGRANKSRANKDRAIE 252
G TTN + NNGR +S N+ RAI+
Sbjct: 57 GSTTTNGSKTNNGR--QSATNRRRAID 81
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,564,553
Number of Sequences: 59808
Number of extensions: 186485
Number of successful extensions: 551
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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