BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30298 (396 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AL132898-18|CAC14411.2| 417|Caenorhabditis elegans Hypothetical... 32 0.13 >AL132898-18|CAC14411.2| 417|Caenorhabditis elegans Hypothetical protein Y59A8B.13 protein. Length = 417 Score = 32.3 bits (70), Expect = 0.13 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 1/67 (1%) Frame = +3 Query: 12 TTGQRKSTTKQKLRKETKQINTCRKPL-CRQMYHEHXXXXXXXXXXXLPERALSRQMYHK 188 TT + + T+ + K+T CRK L ++ Y EH + L R Sbjct: 44 TTQKFRQTSNGRTMKQTWTCGVCRKELSSKRSYTEHMNIHNKSRPFQSSQMTLHRHKLRN 103 Query: 189 HRPREQW 209 H P+ +W Sbjct: 104 HTPKAEW 110 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 7,553,913 Number of Sequences: 27780 Number of extensions: 126776 Number of successful extensions: 349 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 337 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 348 length of database: 12,740,198 effective HSP length: 74 effective length of database: 10,684,478 effective search space used: 609015246 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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