Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30298
         (396 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g02816.1 68414.m00241 expressed protein contains Pfam profile...    31   0.37 
At5g45650.1 68418.m05613 subtilase family protein contains Pfam ...    26   7.9  
At2g39180.1 68415.m04812 protein kinase family protein contains ...    26   7.9  
At1g06920.1 68414.m00735 ovate family protein 58% similar to ova...    26   7.9  

>At1g02816.1 68414.m00241 expressed protein contains Pfam profile
           PF04398: Protein of unknown function, DUF538
          Length = 166

 Score = 30.7 bits (66), Expect = 0.37
 Identities = 17/35 (48%), Positives = 19/35 (54%)
 Frame = -2

Query: 392 FFFFLHCIYKVLIGAHRDDNAYTADHLETSDLIPI 288
           FFFFL CI   LI A  DD+  TA  L  S   P+
Sbjct: 9   FFFFLFCIPSPLIAAANDDDIPTAYTLLQSYNFPV 43


>At5g45650.1 68418.m05613 subtilase family protein contains Pfam
           domain, PF00082: Subtilase family; contains Pfam domain,
           PF02225: protease associated (PA) domain
          Length = 791

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +1

Query: 268 PHVTGASIGMRSDVSKWSAV*ALSSLCAPMSTLYMQCKKKK 390
           PHV GA   +++   KWS+    S+L   M+T +M   KKK
Sbjct: 582 PHVAGAIALLKAIHPKWSSAAIRSAL---MTTAWMTNDKKK 619


>At2g39180.1 68415.m04812 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 776

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -3

Query: 238 LCSPGFC*P-GHCSRGLCLWYICRLSALSGS 149
           LCSPG C P G+C  G   W+    S L  S
Sbjct: 330 LCSPGMCSPRGNCGDG---WFAFNASILKES 357


>At1g06920.1 68414.m00735 ovate family protein 58% similar to ovate
           protein (GI:23429649) [Lycopersicon esculentum];
           contains TIGRFAM TIGR01568 : uncharacterized
           plant-specific domain TIGR01568
          Length = 315

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 8   DYYRTKKKHNKTEITKRNKTNKYLQETTLSADVPR 112
           D  RTKKKH KT ++   +++       L A  PR
Sbjct: 190 DACRTKKKHQKTLVSSGRRSSAKSPRIKLRARSPR 224


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,947,051
Number of Sequences: 28952
Number of extensions: 114056
Number of successful extensions: 249
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 249
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)