Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30297
(378 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 32 0.034
SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom... 26 2.3
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 25 3.9
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 25 5.2
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 25 5.2
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 5.2
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|... 24 6.9
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 24 9.1
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 24 9.1
SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual 24 9.1
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 31.9 bits (69), Expect = 0.034
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +1
Query: 58 SSGYTAPDGTPIQITYTADANGYQPSGAHLPTTPAPLP-IPDYIARAIEYIRTHP 219
S GYT+P + + Y + Y PS T+PA +P P Y + Y T P
Sbjct: 1536 SPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSP 1590
Score = 26.6 bits (56), Expect = 1.3
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = +1
Query: 40 SIAVQGSSGYTAPDGTPIQITYTADANGYQPSG-AHLPTTPAPLPI-PDYIARAIEYIRT 213
S A+ G T+P +P Y+ Y PS ++ PT+P+ P P Y + Y T
Sbjct: 1544 SSAMSPGYGLTSPSYSPSSPGYSTSP-AYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1602
Query: 214 HP 219
P
Sbjct: 1603 SP 1604
>SPAC23H4.06 |gln1||glutamate-ammonia ligase
Gln1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 359
Score = 25.8 bits (54), Expect = 2.3
Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = -3
Query: 97 SEWEYHQGQCSRLNLG-RRWM 38
S+WEY G C+ + +G + WM
Sbjct: 201 SQWEYQVGPCAGIEMGDQLWM 221
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 25.0 bits (52), Expect = 3.9
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +1
Query: 46 AVQGSSGYTAPDGTPIQITYTADANGYQPSGAHLP 150
A+ G G TAP G P + +N P G +P
Sbjct: 547 AMPGIPGATAPPGAPGSYNTSESSNLNAPPGVSMP 581
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 24.6 bits (51), Expect = 5.2
Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Frame = +1
Query: 16 VNEGRED--ASIAVQGSSGYTAPDGT---PIQITYTADANGYQPSGAHLPTTPAPLP 171
V+ RED SIA S + T P + P + LPT P PLP
Sbjct: 624 VHNNREDDEVSIASTSSKSNVEMEDTRLLPASLELANTQGASNPPTSALPTVPVPLP 680
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 24.6 bits (51), Expect = 5.2
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = -2
Query: 365 FLTLIEVYFTYCETRHINDR-QCYGLRCFNNS 273
FLT Y C +R + QCY RC NS
Sbjct: 397 FLTNGGCYSYICRSRSCPSKYQCYSCRCARNS 428
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.6 bits (51), Expect = 5.2
Identities = 17/65 (26%), Positives = 27/65 (41%)
Frame = +1
Query: 34 DASIAVQGSSGYTAPDGTPIQITYTADANGYQPSGAHLPTTPAPLPIPDYIARAIEYIRT 213
D + S G+ P P + + + Y+P ++L + PAP P P Y +
Sbjct: 826 DEMASPSSSIGHPLPSPPPADFN-SLNVDFYEPH-SYLES-PAPEPQPSYEEESFNATVI 882
Query: 214 HPPKP 228
H P P
Sbjct: 883 HAPTP 887
>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 595
Score = 24.2 bits (50), Expect = 6.9
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -2
Query: 368 FFLTLIEVYFTYCET 324
FF +E+Y +YC T
Sbjct: 444 FFTACVEIYLSYCNT 458
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 23.8 bits (49), Expect = 9.1
Identities = 11/39 (28%), Positives = 18/39 (46%)
Frame = +1
Query: 49 VQGSSGYTAPDGTPIQITYTADANGYQPSGAHLPTTPAP 165
VQ + YT+ G P T A A + +G ++ +P
Sbjct: 56 VQSPTSYTSMHGLPFSTTQMAAAPAHPTTGYNVSRVTSP 94
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 23.8 bits (49), Expect = 9.1
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +1
Query: 58 SSGYTAPDGTPIQITYTADANGYQPSGAHLPTTPAPLPIP 177
++GYT + + + +T T A G + PTT +P
Sbjct: 1109 TTGYTGTETSTVTVTPTGTATGTTTVVINTPTTTGSEVLP 1148
>SPAC14C4.06c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 307
Score = 23.8 bits (49), Expect = 9.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 5 KECS*TRAVRMHPSPSKVQAATLP 76
KEC V+ HPSP+ V TLP
Sbjct: 221 KECKAADCVKGHPSPATV--TTLP 242
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,412,189
Number of Sequences: 5004
Number of extensions: 26008
Number of successful extensions: 89
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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