Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30297
(378 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_34826| Best HMM Match : Extensin_2 (HMM E-Value=0.29) 33 0.10
SB_39808| Best HMM Match : EGF_CA (HMM E-Value=6.3e-35) 31 0.41
SB_10210| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.41
SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37) 30 0.72
SB_42335| Best HMM Match : Hint (HMM E-Value=1.4013e-45) 29 1.7
SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.2
SB_30485| Best HMM Match : fn3 (HMM E-Value=0.0045) 28 2.9
SB_35514| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.1
SB_2542| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.1
SB_59284| Best HMM Match : CBS (HMM E-Value=1.2e-15) 27 6.7
SB_226| Best HMM Match : Tektin (HMM E-Value=0) 27 6.7
SB_42267| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=5.9e-12) 26 8.8
SB_40825| Best HMM Match : fn3 (HMM E-Value=0.078) 26 8.8
SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.8
SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.8
SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06) 26 8.8
SB_5415| Best HMM Match : ROK (HMM E-Value=1.2e-23) 26 8.8
SB_3565| Best HMM Match : ASC (HMM E-Value=1.1e-12) 26 8.8
SB_2854| Best HMM Match : TUDOR (HMM E-Value=0.00033) 26 8.8
SB_47830| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.8
SB_15221| Best HMM Match : ASC (HMM E-Value=0.0016) 26 8.8
>SB_34826| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
Length = 299
Score = 32.7 bits (71), Expect = 0.10
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 9/65 (13%)
Frame = +1
Query: 52 QGSSGYTAPDGTPIQITYTAD--ANGY-----QPSGAHL--PTTPAPLPIPDYIARAIEY 204
Q S G+T PIQ +YTA + GY P+ AH P T P+ P Y A Y
Sbjct: 14 QHSQGFTTVQNPPIQTSYTAPQASTGYAVQGTAPTAAHYGPPQTQRPVVQPAYSAGTTAY 73
Query: 205 IRTHP 219
++ P
Sbjct: 74 AQSAP 78
>SB_39808| Best HMM Match : EGF_CA (HMM E-Value=6.3e-35)
Length = 850
Score = 30.7 bits (66), Expect = 0.41
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -2
Query: 335 YCETRHINDRQCYGLRCFNNS 273
+C+ +N R CYG+RC+N +
Sbjct: 438 HCDLAMMNGRTCYGVRCYNKT 458
>SB_10210| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 793
Score = 30.7 bits (66), Expect = 0.41
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Frame = +1
Query: 4 QGVLVNEGREDASIAVQGSSGYTAPDGTPIQITYTAD-----ANGYQPSGAHLPTTPA-- 162
+G + + S +V GS G +P GTP+ A A ++ S A LP T A
Sbjct: 494 EGSIHSSSGHSVSGSVTGSIGERSPVGTPVASPVVAPVMSPLAAAHRASSASLPVTTAVS 553
Query: 163 PLPIPDYI 186
P P P Y+
Sbjct: 554 PAPEPTYL 561
>SB_6033| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=1.6e-37)
Length = 1052
Score = 29.9 bits (64), Expect = 0.72
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = +1
Query: 40 SIAVQGSSGYTAPDGTPIQITYTADANGYQP-SGAHLPTTPAPLPI-PDYIARAIEYIRT 213
++A S +P TP +YT + Y P S ++ PT+P+ P P Y + + Y
Sbjct: 654 TLAASPSYSPASPSYTPASPSYTPTSPSYSPASPSYSPTSPSYSPASPSYTSASPSYSPA 713
Query: 214 HP 219
P
Sbjct: 714 SP 715
>SB_42335| Best HMM Match : Hint (HMM E-Value=1.4013e-45)
Length = 825
Score = 28.7 bits (61), Expect = 1.7
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = +1
Query: 55 GSSGYTAPDGTPIQITYTADANGYQPSGAHLPTTPAPLPIP 177
G+ AP GT I+I T + G QP H P PLP P
Sbjct: 92 GAGKPVAPPGTTIRIAVTVNRTG-QPE-IHPEVHPGPLPPP 130
>SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 941
Score = 28.3 bits (60), Expect = 2.2
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +1
Query: 67 YTAPDGTPIQITYTA--DANGYQPSGAHLPTTPAPLPIPD 180
Y +P T Y A D GY PS +P++P P P D
Sbjct: 561 YISPTATAGDRRYPARPDPMGYSPSEMGVPSSPLPRPASD 600
>SB_30485| Best HMM Match : fn3 (HMM E-Value=0.0045)
Length = 514
Score = 27.9 bits (59), Expect = 2.9
Identities = 19/68 (27%), Positives = 28/68 (41%)
Frame = +1
Query: 16 VNEGREDASIAVQGSSGYTAPDGTPIQITYTADANGYQPSGAHLPTTPAPLPIPDYIARA 195
++ G A+ +G+ T P G P Q Y P G H TTP P +Y +
Sbjct: 425 LHPGDTHATTTPRGTHATTTPRGVPTQQLY--------PGGTHATTTPRRYPRNNY-TQG 475
Query: 196 IEYIRTHP 219
+ + HP
Sbjct: 476 VPTQQLHP 483
Score = 27.5 bits (58), Expect = 3.8
Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Frame = +1
Query: 55 GSSGYTAPDGTPIQITYTADANGYQ--PSGAHLPTTPAPLPIPDYIARAIEYIRTHP 219
G+ T P P + YT Q P G H TTP P DY + + HP
Sbjct: 457 GTHATTTPRRYP-RNNYTQGVPTQQLHPGGTHATTTPRRYPRNDYTQEGVPTQQLHP 512
Score = 26.6 bits (56), Expect = 6.7
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 2/60 (3%)
Frame = +1
Query: 55 GSSGYTAPDGTPIQITYTADANGYQ--PSGAHLPTTPAPLPIPDYIARAIEYIRTHPPKP 228
G+ T P G P + YT Q P G H TTP P +Y + + + HP P
Sbjct: 345 GTHATTTPRGYP-RNNYTQGVPTQQLHPGGTHATTTPRGYPRNNY-TQGVPTQQLHPGVP 402
>SB_35514| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 27.1 bits (57), Expect = 5.1
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 31 EDASIAVQGSSG-YTAPDGTPIQITYTADANGYQPSGAHLPTTPAPLPI 174
E+A + G G Y+APD Y+A ++G P G + P+ P PI
Sbjct: 26 ENARTSSPGFQGAYSAPDPFRNSRGYSASSDGTGPQGMY-PSAPEGYPI 73
>SB_2542| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 761
Score = 27.1 bits (57), Expect = 5.1
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -3
Query: 94 EWEYHQGQCSRLNLGRRWMHPHG 26
EW +G LN G +W HP G
Sbjct: 479 EWRRTKGATPTLNTGPQWGHPKG 501
>SB_59284| Best HMM Match : CBS (HMM E-Value=1.2e-15)
Length = 397
Score = 26.6 bits (56), Expect = 6.7
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +2
Query: 236 ANVFKLLIVDKDDYC*NIVSHS 301
A V +L++VDK+D+C ++S S
Sbjct: 364 ARVHRLVVVDKEDHCIGVLSLS 385
>SB_226| Best HMM Match : Tektin (HMM E-Value=0)
Length = 534
Score = 26.6 bits (56), Expect = 6.7
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 67 YTAPDGTPIQITYTADANGYQPSGAHLPTTPAPL-PIPDYIARAIEY 204
Y P G P + TYTA G +P TTP + P+ ++R+ E+
Sbjct: 22 YLRPTGGPYETTYTASFQGIRPH-----TTPYSIRPMTMSMSRSYEF 63
>SB_42267| Best HMM Match : 2OG-FeII_Oxy (HMM E-Value=5.9e-12)
Length = 902
Score = 26.2 bits (55), Expect = 8.8
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Frame = +1
Query: 79 DGTPIQITYTADANGYQPSGAHLPTTPAPLPIP--DYIARAIEYIR-THPPKP--EVGQR 243
+G P T G Q L TPAPLP+P + + + T PPKP E G R
Sbjct: 404 EGPPPLPTEGEQIKGPQGPKVKLSVTPAPLPLPLEQLTPKEPKGPKVTTPPKPKEESGDR 463
Query: 244 I 246
I
Sbjct: 464 I 464
>SB_40825| Best HMM Match : fn3 (HMM E-Value=0.078)
Length = 432
Score = 26.2 bits (55), Expect = 8.8
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = +1
Query: 22 EGREDASIAVQGSSGYTAPDGTPIQITYTADANGYQPSGAHLPTTPAPLPIPDYIARAIE 201
+G A+ +G+ T P G P Q + P G H TTP P +Y + +
Sbjct: 207 QGGTHATTTPRGTHATTTPRGVPTQQLH--------PGGTHATTTPRGYPRNNY-TQGVP 257
Query: 202 YIRTHP 219
+ HP
Sbjct: 258 TQQLHP 263
>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1850
Score = 26.2 bits (55), Expect = 8.8
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +1
Query: 19 NEGREDASIAVQGS-SGYTAPDGTPIQITYTADANGYQPSGAHLP--TTPAPLPI 174
N ++ ++ G +G P G P+Q T G++ +P T APLPI
Sbjct: 1576 NSTQQTIRVSFAGQQTGSQEPTGPPLQRNVTVLFTGFENETVSVPLRNTSAPLPI 1630
>SB_28657| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3296
Score = 26.2 bits (55), Expect = 8.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 154 TPAPLPIPDYIARAIEYIRTHPPKPEVGQR 243
TP L + I RA+ +++T PP V Q+
Sbjct: 813 TPVTLSVSPVIERALTFLKTLPPNMSVMQQ 842
>SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06)
Length = 1223
Score = 26.2 bits (55), Expect = 8.8
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 164 GAGVVGRWAPEGWY 123
G V+ RWA EGWY
Sbjct: 455 GDEVLARWADEGWY 468
>SB_5415| Best HMM Match : ROK (HMM E-Value=1.2e-23)
Length = 313
Score = 26.2 bits (55), Expect = 8.8
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = +1
Query: 43 IAVQGSSGYTAPDGTPIQITYTADANGYQPSGAHLPTTPAPLPIPDYI 186
+ + G T +GTPI +A A L T P+P+P I
Sbjct: 96 VEIVGVFKRTLKEGTPIAFDTDVNAPALAEMAAALNTKTIPIPLPTVI 143
>SB_3565| Best HMM Match : ASC (HMM E-Value=1.1e-12)
Length = 575
Score = 26.2 bits (55), Expect = 8.8
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = -3
Query: 91 WEYHQGQCSRLNLGRRWMHPHGPRLRA 11
W Y G C N G+ W P LR+
Sbjct: 145 WHYRYGNCYVFNSGKDWQGEPKPILRS 171
>SB_2854| Best HMM Match : TUDOR (HMM E-Value=0.00033)
Length = 359
Score = 26.2 bits (55), Expect = 8.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 191 RAM*SGIGRGAGVVGRWAPEGWYPLASA 108
RAM +G GRG G + RW PLA++
Sbjct: 164 RAM-AGRGRGRGALARWTISPGQPLAAS 190
>SB_47830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 767
Score = 26.2 bits (55), Expect = 8.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 166 LPIPDYIARAIEYIRTHPPKPEV 234
LP+P YI+R E +R H K E+
Sbjct: 75 LPVPYYISRVQEIVRCHRGKLEL 97
>SB_15221| Best HMM Match : ASC (HMM E-Value=0.0016)
Length = 490
Score = 26.2 bits (55), Expect = 8.8
Identities = 10/27 (37%), Positives = 12/27 (44%)
Frame = -3
Query: 91 WEYHQGQCSRLNLGRRWMHPHGPRLRA 11
W Y G C N G+ W P LR+
Sbjct: 12 WHYRYGNCYVFNSGKDWQGEPKPILRS 38
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,920,750
Number of Sequences: 59808
Number of extensions: 215409
Number of successful extensions: 517
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 632178915
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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