Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30297
         (378 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest...    33   0.41 
X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest...    33   0.41 
AK074439-1|BAB85084.1|  146|Homo sapiens protein ( Homo sapiens ...    29   3.8  
M94132-1|AAA59164.1|  984|Homo sapiens MUC2 protein.                   29   6.6  
M22405-1|AAA36334.1|  278|Homo sapiens protein ( Human intestina...    29   6.6  
L21998-1|AAB95295.1| 5179|Homo sapiens mucin protein.                  29   6.6  
AF257166-1|AAG18515.1|  147|Homo sapiens intestinal mucin 2 prot...    29   6.6  
BC043005-1|AAH43005.2|  794|Homo sapiens MGC39581 protein protein.     28   8.8  
BC031233-1|AAH31233.2|  468|Homo sapiens TMEM146 protein protein.      28   8.8  

>X74874-1|CAA52862.1| 1970|Homo sapiens RNA polymerase II largest
            subunit protein.
          Length = 1970

 Score = 32.7 bits (71), Expect = 0.41
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +1

Query: 70   TAPDGTPIQITYTADANGYQPSG-AHLPTTPAPLPI-PDYIARAIEYIRTHP 219
            ++P  TP   TYT  +  Y PS  ++ PT+P   P  P Y   + EY  T P
Sbjct: 1807 SSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSP 1858


>X63564-1|CAA45125.1| 1970|Homo sapiens RNA polymerase II largest
            subunit protein.
          Length = 1970

 Score = 32.7 bits (71), Expect = 0.41
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +1

Query: 70   TAPDGTPIQITYTADANGYQPSG-AHLPTTPAPLPI-PDYIARAIEYIRTHP 219
            ++P  TP   TYT  +  Y PS  ++ PT+P   P  P Y   + EY  T P
Sbjct: 1807 SSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSP 1858


>AK074439-1|BAB85084.1|  146|Homo sapiens protein ( Homo sapiens
           cDNA FLJ23859 fis, clone LNG08092. ).
          Length = 146

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +1

Query: 67  YTAPDGTPIQITYTADANGYQPSGAHLPTTPAP 165
           +  PD    Q TYT     YQP+ A+ PTTP P
Sbjct: 50  FVPPDMMQPQQTYTGQI--YQPTQAYPPTTPQP 80


>M94132-1|AAA59164.1|  984|Homo sapiens MUC2 protein.
          Length = 984

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +1

Query: 70  TAPDGTPIQITYTADANGYQPSGAHLPTTPAPLPIPDYIARAIEYIRTHPPKP 228
           T+P GTP + T T  ++   PS     TT A  P P  ++     IRT   +P
Sbjct: 81  TSPPGTPTRGTTTGSSSAPTPSTVQTTTTSAWTPTPTPLSTP-SIIRTTGLRP 132


>M22405-1|AAA36334.1|  278|Homo sapiens protein ( Human intestinal
           mucin mRNA, partial cds, clone SMUC 41. ).
          Length = 278

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +1

Query: 70  TAPDGTPIQITYTADANGYQPSGAHLPTTPAPLPIPDYIARAIEYIRTHPPKP 228
           T+P GTP + T T  ++   PS     TT A  P P  ++     IRT   +P
Sbjct: 202 TSPPGTPTRGTTTGSSSAPTPSTVQTTTTSAWTPTPTPLSTP-SIIRTTGLRP 253


>L21998-1|AAB95295.1| 5179|Homo sapiens mucin protein.
          Length = 5179

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +1

Query: 70   TAPDGTPIQITYTADANGYQPSGAHLPTTPAPLPIPDYIARAIEYIRTHPPKP 228
            T+P GTP + T T  ++   PS     TT A  P P  ++     IRT   +P
Sbjct: 4276 TSPPGTPTRGTTTGSSSAPTPSTVQTTTTSAWTPTPTPLSTP-SIIRTTGLRP 4327


>AF257166-1|AAG18515.1|  147|Homo sapiens intestinal mucin 2
           protein.
          Length = 147

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +1

Query: 70  TAPDGTPIQITYTADANGYQPSGAHLPTTPAPLPIPDYIARAIEYIRTHPPKP 228
           T+P GTP + T T  ++   PS     TT A  P P  ++     IRT   +P
Sbjct: 70  TSPPGTPTRGTTTGSSSAPTPSTVQTTTTSAWTPTPTPLSTP-SIIRTTGLRP 121


>BC043005-1|AAH43005.2|  794|Homo sapiens MGC39581 protein protein.
          Length = 794

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = -2

Query: 377 FFFFFLTLIEVYFTYCETRHINDRQCYG 294
           F+ F++++++ Y++YC+   I     YG
Sbjct: 682 FYVFYISIVDPYYSYCQLETIFSIYVYG 709


>BC031233-1|AAH31233.2|  468|Homo sapiens TMEM146 protein protein.
          Length = 468

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = -2

Query: 377 FFFFFLTLIEVYFTYCETRHINDRQCYG 294
           F+ F++++++ Y++YC+   I     YG
Sbjct: 356 FYVFYISIVDPYYSYCQLETIFSIYVYG 383


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,216,904
Number of Sequences: 237096
Number of extensions: 1146982
Number of successful extensions: 6942
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6936
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2536788584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)