Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30297
(378 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical pr... 33 0.090
Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical p... 33 0.090
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 30 0.63
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 30 0.63
Z37983-4|CAA86057.1| 803|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z70780-1|CAA94819.1| 336|Caenorhabditis elegans Hypothetical pr... 28 2.5
Z70754-4|CAA94774.1| 130|Caenorhabditis elegans Hypothetical pr... 27 3.4
AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical... 27 4.5
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 26 7.8
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 26 7.8
U64609-7|AAB04604.3| 373|Caenorhabditis elegans Sperm-specific ... 26 7.8
U40802-12|AAK19014.2| 265|Caenorhabditis elegans Sperm-specific... 26 7.8
AF016438-12|AAK84532.1| 407|Caenorhabditis elegans Nuclear horm... 26 7.8
>Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical protein
H05L14.2 protein.
Length = 2162
Score = 32.7 bits (71), Expect = 0.090
Identities = 17/71 (23%), Positives = 33/71 (46%)
Frame = +1
Query: 34 DASIAVQGSSGYTAPDGTPIQITYTADANGYQPSGAHLPTTPAPLPIPDYIARAIEYIRT 213
D A + +S + P+ P+ + + Y +++P PLP P ++A +++
Sbjct: 946 DEQPASESTSAFDIPEHPPVIVPFRNAPIVYSSQTSNIPQIHPPLPPPRFLAMPMQF-SG 1004
Query: 214 HPPKPEVGQRI 246
HPP +G I
Sbjct: 1005 HPPPVIMGPPI 1015
>Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical
protein H05L14.2 protein.
Length = 2162
Score = 32.7 bits (71), Expect = 0.090
Identities = 17/71 (23%), Positives = 33/71 (46%)
Frame = +1
Query: 34 DASIAVQGSSGYTAPDGTPIQITYTADANGYQPSGAHLPTTPAPLPIPDYIARAIEYIRT 213
D A + +S + P+ P+ + + Y +++P PLP P ++A +++
Sbjct: 946 DEQPASESTSAFDIPEHPPVIVPFRNAPIVYSSQTSNIPQIHPPLPPPRFLAMPMQF-SG 1004
Query: 214 HPPKPEVGQRI 246
HPP +G I
Sbjct: 1005 HPPPVIMGPPI 1015
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 29.9 bits (64), Expect = 0.63
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +1
Query: 64 GYTAPDGTPIQITYTADANGYQPSG-AHLPTTPAPLPIP-DYIARAIEYIRTHP 219
G+++P +P TY+ + Y PS + PT+P P P + + +Y T P
Sbjct: 1772 GFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSP 1825
Score = 29.1 bits (62), Expect = 1.1
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +1
Query: 70 TAPDGTPIQITYTADANGYQPSGAHLPTTPAPLP-IPDYIARAIEYIRTHP 219
T+P +P TY+ + Y+ G + P++P P P Y + Y T P
Sbjct: 1692 TSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTYSPTSPSYSPTSP 1742
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 29.9 bits (64), Expect = 0.63
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +1
Query: 64 GYTAPDGTPIQITYTADANGYQPSG-AHLPTTPAPLPIP-DYIARAIEYIRTHP 219
G+++P +P TY+ + Y PS + PT+P P P + + +Y T P
Sbjct: 1779 GFSSPQYSPTSPTYSPTSPSYTPSSPQYSPTSPTYTPSPSEQPGTSAQYSPTSP 1832
Score = 29.1 bits (62), Expect = 1.1
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +1
Query: 70 TAPDGTPIQITYTADANGYQPSGAHLPTTPAPLP-IPDYIARAIEYIRTHP 219
T+P +P TY+ + Y+ G + P++P P P Y + Y T P
Sbjct: 1699 TSPTYSPTSPTYSPTSPSYESGGGYSPSSPKYSPSSPTYSPTSPSYSPTSP 1749
>Z37983-4|CAA86057.1| 803|Caenorhabditis elegans Hypothetical
protein B0393.4 protein.
Length = 803
Score = 28.7 bits (61), Expect = 1.5
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 127 QPSGAHLPTTPAPLPIPDYIARAIE-YIRTHPPKPEVGQR 243
+PS P+ P P P+P+ I ++ + P KP V +R
Sbjct: 47 EPSSPTRPSEPIPPPLPEPIPELVQILLAAEPNKPSVPKR 86
>Z70780-1|CAA94819.1| 336|Caenorhabditis elegans Hypothetical
protein F46B6.2 protein.
Length = 336
Score = 27.9 bits (59), Expect = 2.5
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Frame = -2
Query: 377 FFFFFLTLIEVY----FTYCETRHINDRQCYGLR 288
FFFFF +L+E Y F Y + I D C+GL+
Sbjct: 77 FFFFFSSLMETYCINEFKYAD-ETIKDGVCHGLK 109
>Z70754-4|CAA94774.1| 130|Caenorhabditis elegans Hypothetical
protein F58E6.4 protein.
Length = 130
Score = 27.5 bits (58), Expect = 3.4
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 332 CETRHINDRQCYGLRCFNNSRPYQLSIT 249
C+ ND Q Y CF N+ + LSIT
Sbjct: 90 CQVDDTNDNQFYFCVCFENNCNFPLSIT 117
>AF016448-12|AAB65959.1| 316|Caenorhabditis elegans Hypothetical
protein F41E6.11 protein.
Length = 316
Score = 27.1 bits (57), Expect = 4.5
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +1
Query: 124 YQPSGAHLPTTPAPLPIPDYIARAIEYIRTHPPKPEVGQ 240
YQP+ +P PAP P Y A + + P P Q
Sbjct: 181 YQPTYCAVPPCPAPAATPVYAQPAPRPMPVYAPAPACAQ 219
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 26.2 bits (55), Expect = 7.8
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +1
Query: 58 SSGYTAPDGTPIQITYTADANGYQPSGAHLPTTPAPLP 171
S GY+ + P + A + GY S + P P P P
Sbjct: 556 SGGYSGSEAAP-EAAPAAPSGGYSGSESSAPAAPEPAP 592
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 26.2 bits (55), Expect = 7.8
Identities = 12/38 (31%), Positives = 17/38 (44%)
Frame = +1
Query: 58 SSGYTAPDGTPIQITYTADANGYQPSGAHLPTTPAPLP 171
S GY+ + P + A + GY S + P P P P
Sbjct: 556 SGGYSGSEAAP-EAAPAAPSGGYSGSESSAPAAPEPAP 592
>U64609-7|AAB04604.3| 373|Caenorhabditis elegans Sperm-specific
family, class qprotein 4 protein.
Length = 373
Score = 26.2 bits (55), Expect = 7.8
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 46 AVQGSSGYTAPDGTPIQITYTADANGYQPSGAHLPTTPAPLP 171
A +G+S TA G P+ + T A G PSGA T P
Sbjct: 113 APRGASTMTAVGGAPVGGSSTMTAVGGAPSGASTMTAIGGAP 154
>U40802-12|AAK19014.2| 265|Caenorhabditis elegans Sperm-specific
family, class qprotein 3 protein.
Length = 265
Score = 26.2 bits (55), Expect = 7.8
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 46 AVQGSSGYTAPDGTPIQITYTADANGYQPSGAHLPTTPAPLP 171
A +G+S TA G P+ + T A G PSGA T P
Sbjct: 7 APRGASTMTAVGGAPVGGSSTMTAVGGAPSGASTMTAIGGAP 48
>AF016438-12|AAK84532.1| 407|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 134 protein.
Length = 407
Score = 26.2 bits (55), Expect = 7.8
Identities = 9/36 (25%), Positives = 18/36 (50%)
Frame = -1
Query: 306 AVLWLTMFQQ*SSLSTINNLNTLADLWLGWVSSDVL 199
AV W + F + ++L ++ + L W+ W + L
Sbjct: 203 AVEWFSNFSEFNALDELSKMTILKSAWISWTRLEKL 238
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,908,719
Number of Sequences: 27780
Number of extensions: 159793
Number of successful extensions: 559
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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