Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30297
(378 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ... 34 0.027
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ... 31 0.34
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ... 31 0.34
At3g61260.1 68416.m06856 DNA-binding family protein / remorin fa... 30 0.44
At3g25950.1 68416.m03234 hypothetical protein 30 0.44
At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10... 27 3.1
At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10... 27 3.1
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro... 27 4.1
At3g51340.1 68416.m05620 aspartyl protease family protein contai... 27 4.1
At2g04780.2 68415.m00489 fasciclin-like arabinogalactan-protein ... 27 4.1
At2g04780.1 68415.m00488 fasciclin-like arabinogalactan-protein ... 27 4.1
At4g15730.1 68417.m02394 expressed protein 27 5.5
At2g26410.1 68415.m03169 calmodulin-binding family protein simil... 27 5.5
At5g08450.2 68418.m00996 expressed protein KED, Nicotiana tabacu... 26 7.2
At5g08450.1 68418.m00995 expressed protein KED, Nicotiana tabacu... 26 7.2
At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pf... 26 7.2
At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pf... 26 7.2
At1g74360.1 68414.m08615 leucine-rich repeat transmembrane prote... 26 7.2
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 26 9.6
>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
subunit (RPB205) (RPII) (RPB1) nearly identical to
P|P18616 DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) {Arabidopsis thaliana}
Length = 1840
Score = 34.3 bits (75), Expect = 0.027
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +1
Query: 58 SSGY--TAPDGTPIQITYTADANGYQP-SGAHLPTTPAPLPI-PDYIARAIEYIRTHP 219
S GY T+P +P TY+ + GY P S A+ PT+P+ P P Y + Y T P
Sbjct: 1563 SPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSP 1620
>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 30.7 bits (66), Expect = 0.34
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 115 ANGYQPSGAHLPTTPAPLPIPDYIA 189
A G+ P GAH P P P P+P +A
Sbjct: 227 AEGFPPLGAHGPFQPTPSPVPTPLA 251
>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 30.7 bits (66), Expect = 0.34
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 115 ANGYQPSGAHLPTTPAPLPIPDYIA 189
A G+ P GAH P P P P+P +A
Sbjct: 227 AEGFPPLGAHGPFQPTPSPVPTPLA 251
>At3g61260.1 68416.m06856 DNA-binding family protein / remorin
family protein similar to DNA-binding protein gi|601843
[Arabidopsis thaliana], remorin [Solanum tuberosum]
GI:1881585; contains Pfam profiles PF03763: Remorin
C-terminal region, PF03766: Remorin N-terminal region
Length = 212
Score = 30.3 bits (65), Expect = 0.44
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 85 TPIQITYTADANGYQPSGAHLPTTPAPLPIPDYIARAIEYIRTHPPKPE 231
+P ++T A A+ P+ A +P PAP P P + + + + P PE
Sbjct: 13 SPAKVTTPAPADTPAPAPAEIPA-PAPAPTPADVTKDVAEEKIQNPPPE 60
>At3g25950.1 68416.m03234 hypothetical protein
Length = 251
Score = 30.3 bits (65), Expect = 0.44
Identities = 21/50 (42%), Positives = 25/50 (50%)
Frame = -2
Query: 275 SRPYQLSIT*IRWPTSGLGG*VLMYSMARAM*SGIGRGAGVVGRWAPEGW 126
S P+ L T +R GL G V++Y MA G G GVV RWA W
Sbjct: 175 SPPFYLFYTVVR----GLAGPVVLYDMATFY--GSGAADGVVPRWAWLSW 218
>At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 27.5 bits (58), Expect = 3.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 115 ANGYQPSGAHLPTTPAPLPIPDYIA 189
A G+ P GAH P P P+P +A
Sbjct: 227 AGGFPPLGAHGPFQPTASPVPTPLA 251
>At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 27.5 bits (58), Expect = 3.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 115 ANGYQPSGAHLPTTPAPLPIPDYIA 189
A G+ P GAH P P P+P +A
Sbjct: 227 AGGFPPLGAHGPFQPTASPVPTPLA 251
>At5g58160.1 68418.m07280 formin homology 2 domain-containing
protein / FH2 domain-containing protein low similarity
to SP|Q05858 Formin (Limb deformity protein) {Gallus
gallus}; contains Pfam profile PF02181: Formin Homology
2(FH2) Domain
Length = 1307
Score = 27.1 bits (57), Expect = 4.1
Identities = 20/64 (31%), Positives = 25/64 (39%)
Frame = +1
Query: 49 VQGSSGYTAPDGTPIQITYTADANGYQPSGAHLPTTPAPLPIPDYIARAIEYIRTHPPKP 228
V SS P P T +NG + P PAP +P + A T PP P
Sbjct: 722 VHTSSPPPPPPPPPPPAPPTPQSNGISAMKSSPPAPPAPPRLPTHSASPPP--PTAPPPP 779
Query: 229 EVGQ 240
+GQ
Sbjct: 780 PLGQ 783
>At3g51340.1 68416.m05620 aspartyl protease family protein contains
Eukaryotic and viral aspartyl proteases active site,
PROSITE:PS00141
Length = 518
Score = 27.1 bits (57), Expect = 4.1
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +1
Query: 55 GSSGYTAPDGTPIQITYTADANGYQPSGAHLPTTPAPLPI 174
G GYT + TP+ T+ A G +G + P +P+
Sbjct: 273 GDKGYTDQEETPLVSLETSTAYGVNVTGVSVGGVPVDVPL 312
>At2g04780.2 68415.m00489 fasciclin-like arabinogalactan-protein
(FLA7) identical to gi_13377782_gb_AAK20860
Length = 254
Score = 27.1 bits (57), Expect = 4.1
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 97 ITYTADANGYQPSGAHLPTTPAPLPIPDYI 186
I +A A P LP TPAP P P+ +
Sbjct: 16 IVCSASAKTASPPAPVLPPTPAPAPAPENV 45
>At2g04780.1 68415.m00488 fasciclin-like arabinogalactan-protein
(FLA7) identical to gi_13377782_gb_AAK20860
Length = 254
Score = 27.1 bits (57), Expect = 4.1
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 97 ITYTADANGYQPSGAHLPTTPAPLPIPDYI 186
I +A A P LP TPAP P P+ +
Sbjct: 16 IVCSASAKTASPPAPVLPPTPAPAPAPENV 45
>At4g15730.1 68417.m02394 expressed protein
Length = 1059
Score = 26.6 bits (56), Expect = 5.5
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +1
Query: 67 YTAPDGTPIQITYTADANGYQPSGAHLPTTPAPLPI 174
+ +P T ++ D YQ SG+ L P +PI
Sbjct: 102 FQSPPATSCKLVRNQDPQNYQTSGSLLAQAPGKVPI 137
>At2g26410.1 68415.m03169 calmodulin-binding family protein similar
to SF16 protein [Helianthus annuus] GI:560150; contains
Pfam profile PF00612: IQ calmodulin-binding motif
Length = 516
Score = 26.6 bits (56), Expect = 5.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 130 PSGAHLPTTPAPLPIPDYIARAIEYIRTHPPKP 228
PS H P P P P+PD+ + + + PP P
Sbjct: 46 PSSVHRPYPPPP-PLPDFAPQPLLPPPSPPPPP 77
>At5g08450.2 68418.m00996 expressed protein KED, Nicotiana tabacum,
EMBL:AB009883
Length = 918
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/37 (29%), Positives = 15/37 (40%)
Frame = +1
Query: 64 GYTAPDGTPIQITYTADANGYQPSGAHLPTTPAPLPI 174
G T P + Y + +G P H P TP P +
Sbjct: 12 GVTHPSSSSSVAKYPHEDSGSYPKSPHQPVTPPPAQV 48
>At5g08450.1 68418.m00995 expressed protein KED, Nicotiana tabacum,
EMBL:AB009883
Length = 918
Score = 26.2 bits (55), Expect = 7.2
Identities = 11/37 (29%), Positives = 15/37 (40%)
Frame = +1
Query: 64 GYTAPDGTPIQITYTADANGYQPSGAHLPTTPAPLPI 174
G T P + Y + +G P H P TP P +
Sbjct: 12 GVTHPSSSSSVAKYPHEDSGSYPKSPHQPVTPPPAQV 48
>At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1135
Score = 26.2 bits (55), Expect = 7.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 121 GYQPSGAHLPTTPAPLPIPDYIA 189
G+ P GAH P P P P+ +A
Sbjct: 229 GFPPLGAHGPFQPTPAPLTTSLA 251
>At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1137
Score = 26.2 bits (55), Expect = 7.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 121 GYQPSGAHLPTTPAPLPIPDYIA 189
G+ P GAH P P P P+ +A
Sbjct: 229 GFPPLGAHGPFQPTPAPLTTSLA 251
>At1g74360.1 68414.m08615 leucine-rich repeat transmembrane protein
kinase, putative similar to brassinosteroid insensitive 1
GB:AAC49810 (putative receptor protein kinase); contains
Pfam profiles: PF00560 Leucine Rich Repeat (17 repeats),
PF00069 Eukaryotic protein kinase domain
Length = 1106
Score = 26.2 bits (55), Expect = 7.2
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +1
Query: 13 LVNEGREDASIAVQGSSGYTAPD-GTPIQITYTADANGY 126
L+N G S + G+ GY AP+ G Q T D Y
Sbjct: 965 LLNVGDSHVSTVIAGTIGYVAPEYGQTWQATTRGDVYSY 1003
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 25.8 bits (54), Expect = 9.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 94 QITYTADANGYQPSGAHLPTTPA 162
QI D+N +QP G HL TT A
Sbjct: 116 QIGGPVDSNMHQPVGLHLATTAA 138
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,488,779
Number of Sequences: 28952
Number of extensions: 147541
Number of successful extensions: 561
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 517767328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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