Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30294X
         (562 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    27   1.9  
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc...    27   2.5  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    25   5.8  

>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 285 LIYSRNDVHLLSIYRYDILCCLCISCVNSPIVF 187
           ++ S+N VHLLS+ +        ISC  +P++F
Sbjct: 116 VVTSKNQVHLLSLSKGSWEVTNTISCEKTPLLF 148


>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
           Uap56|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/23 (43%), Positives = 19/23 (82%)
 Frame = -2

Query: 177 KLFA*IRELLLKINNIKDFVINK 109
           +L A +RE +LK+N++K FV+++
Sbjct: 183 RLNALVREKILKVNSVKHFVLDE 205


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 508 LNRITVNYEDFYLVVLVFC 452
           L+RIT  Y  F+L+VLV C
Sbjct: 211 LDRITRFYATFHLIVLVVC 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,906,872
Number of Sequences: 5004
Number of extensions: 35688
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)