Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30294X
         (562 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0885 + 6966700-6966979,6967930-6968110,6968224-6968365,696...    31   0.63 
06_03_0181 + 17618888-17619125,17621503-17621683,17621765-176219...    28   4.4  
02_05_0973 + 33209385-33209456,33210517-33210721,33210810-332109...    28   5.9  

>01_01_0885 +
           6966700-6966979,6967930-6968110,6968224-6968365,
           6968448-6968517,6968617-6968783
          Length = 279

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 11/42 (26%), Positives = 25/42 (59%)
 Frame = -3

Query: 284 LFIVEMMSICCLFIDMIYCVACVYHV*IPLLSSSYKNCLHKF 159
           L+++ ++  CC F+ ++Y V  V H  +P+L   Y++ +  +
Sbjct: 206 LWLLSVLGSCCNFLTLVYIVFVVLHT-VPILYEKYEDQIDSY 246


>06_03_0181 +
           17618888-17619125,17621503-17621683,17621765-17621906,
           17622002-17622071,17622162-17622307,17623382-17623948,
           17624558-17624641,17624723-17624797,17625049-17625217,
           17625395-17625586,17625662-17626053
          Length = 751

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = -3

Query: 284 LFIVEMMSICCLFIDMIYCVACVYHV*IPLLSSSYKNCLHKF 159
           L+++  +  CC F+ +IY    + H  +P+L   Y++ +  F
Sbjct: 192 LWVLSEVGSCCDFLTLIYVAVLMLHT-VPILYDKYQDKVDHF 232


>02_05_0973 +
           33209385-33209456,33210517-33210721,33210810-33210975,
           33211268-33211490,33211928-33212004,33212090-33212183,
           33212202-33212271,33212350-33212447,33212565-33212692,
           33212772-33212900,33213013-33213421,33213984-33214105,
           33214224-33214313,33215092-33215304,33215453-33215584,
           33216258-33216333,33216403-33216420
          Length = 773

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -2

Query: 420 LILLNLSKKSHKNHKVF*YQFHKYLAFIN*KKTPVNYLKFIY 295
           +I+LNL KK  +   +   +F + +  IN      N+L+F++
Sbjct: 328 IIILNLIKKRERRESILRREFDRAIRIINKNIPEENHLRFLH 369


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,997,477
Number of Sequences: 37544
Number of extensions: 154293
Number of successful extensions: 269
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 269
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)