Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30294X
         (562 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44547| Best HMM Match : 7tm_1 (HMM E-Value=7.9e-11)                 29   3.4  
SB_6887| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.5  
SB_26093| Best HMM Match : Phage_integrase (HMM E-Value=0.13)          28   6.0  

>SB_44547| Best HMM Match : 7tm_1 (HMM E-Value=7.9e-11)
          Length = 332

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -1

Query: 490 NYEDFYLVVLVFCDFL*GLLMVISYST 410
           +Y  F ++ L FC+FL  +L++++Y T
Sbjct: 179 SYRAFQILFLFFCEFLPSVLLLVAYVT 205


>SB_6887| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 875

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 153 LLLKINNIKDFVINKKKQYL*DYIVYFK 70
           L+ K NN +  ++ +KK  L  YI++FK
Sbjct: 502 LVQKFNNNRSIMVERKKSLLLTYIIWFK 529


>SB_26093| Best HMM Match : Phage_integrase (HMM E-Value=0.13)
          Length = 219

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 255 LSIYRYDILCCLCISCVNSP 196
           LS+Y+Y  L C C   VNSP
Sbjct: 93  LSLYQYKKLACTCSIAVNSP 112


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,406,327
Number of Sequences: 59808
Number of extensions: 205662
Number of successful extensions: 410
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)