Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30294X
         (562 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110478-12|CAM33509.1|  108|Caenorhabditis elegans Hypothetical...    29   3.0  
AL110478-9|CAB54343.2|  113|Caenorhabditis elegans Hypothetical ...    29   3.0  
AF106575-17|AAD56300.2|  333|Caenorhabditis elegans Serpentine r...    29   3.0  
Z50027-1|CAA90331.1|  583|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U41010-1|AAF98589.2|  313|Caenorhabditis elegans Serpentine rece...    27   9.2  
U12965-5|AAA20612.2|  346|Caenorhabditis elegans Serpentine rece...    27   9.2  

>AL110478-12|CAM33509.1|  108|Caenorhabditis elegans Hypothetical
           protein Y26D4A.17 protein.
          Length = 108

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +1

Query: 286 FNQVNKFQIIYWSFFLINKCKIFMKLILKNLMIFMRFL 399
           F+++N+F I+Y+SF   ++   F  +I   L+ F  ++
Sbjct: 46  FDKINQFYILYFSFLRFHELNHFPLIICIYLIFFFEYI 83


>AL110478-9|CAB54343.2|  113|Caenorhabditis elegans Hypothetical
           protein Y26D4A.5 protein.
          Length = 113

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +1

Query: 286 FNQVNKFQIIYWSFFLINKCKIFMKLILKNLMIFMRFL 399
           F+++N+F I+Y+SF   ++   F  +I   L+ F  ++
Sbjct: 51  FDKINQFYILYFSFLRFHELNHFPLIICIYLIFFFEYI 88


>AF106575-17|AAD56300.2|  333|Caenorhabditis elegans Serpentine
           receptor, class h protein5 protein.
          Length = 333

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/48 (31%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
 Frame = -2

Query: 327 KTPVNYLKFI-YLIKLIYSRN--DVHLLSIYRYDILCCLCISCVNSPI 193
           K+PV++ K+  YL+  ++S    ++H+ +I++  I+  + I C NSP+
Sbjct: 39  KSPVHFSKYRNYLVAHVFSGLLLELHMGTIWKVTIILPIPIMCSNSPL 86


>Z50027-1|CAA90331.1|  583|Caenorhabditis elegans Hypothetical
           protein C39B10.1 protein.
          Length = 583

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = -2

Query: 309 LKFIYLIKLIYSRNDVHLLSIYRYDI---LCCLCISCVNSPIVFLI*KLFA*IRELLLKI 139
           LK IY  ++   R  VHL  I  +DI   LCCL   C+ S +++ +  ++     +L  +
Sbjct: 66  LKQIYGSRVFSKRLAVHLGMICFWDIIYLLCCLSTYCIPS-LIYSVTPIYGPFSYILFFL 124

Query: 138 NNIKDFVIN 112
                F ++
Sbjct: 125 QPFASFCVS 133


>U41010-1|AAF98589.2|  313|Caenorhabditis elegans Serpentine
           receptor, class x protein19 protein.
          Length = 313

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/55 (21%), Positives = 29/55 (52%)
 Frame = +1

Query: 220 QATQYIISINRQQMDIISTINKFNQVNKFQIIYWSFFLINKCKIFMKLILKNLMI 384
           +A++++ +++    +I + +N FN +N+F  +Y  F        F   +L+N  +
Sbjct: 75  KASRFVGTVSMIIYEIAAQLNFFNSLNRFCAVYMIFLYDRIFSNFNTYMLRNFAV 129


>U12965-5|AAA20612.2|  346|Caenorhabditis elegans Serpentine
           receptor, class b (beta)protein 11 protein.
          Length = 346

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -2

Query: 465 Y*YFVTFCKVY*WLFLILLNLSKKS-HKNHK-VF*YQFHKYLAF 340
           Y   ++FC V+  ++ +L  LSK S H N K +F   F   +AF
Sbjct: 26  YQMIISFCSVFPLIYFLLFKLSKSSFHGNLKTIFISYFVSLVAF 69


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,122,272
Number of Sequences: 27780
Number of extensions: 186402
Number of successful extensions: 433
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1155524042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)