Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30293X
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ...    27   1.5  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    27   2.7  
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    27   2.7  
SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces...    26   4.7  
SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr 2...    25   8.1  
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    25   8.1  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   8.1  
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   8.1  
SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|c...    25   8.1  

>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 381 SMRIISRSGDQVSPAEIGDNLVLQVDV 461
           S  I++  GD+V+  EIGD +V+  D+
Sbjct: 99  SCGIVAEKGDEVNNLEIGDRVVIAFDL 125


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +3

Query: 354 ANTGPPPTCSMRIISRSGDQVSPAEIGDNLVLQVDVQPSSIYGGFGRSCVA 506
           +NT   PT S+ I+S      +PA+   N + QV     SIY  F    +A
Sbjct: 280 SNTINIPTDSLSIVSNPSQ--TPAKFDSNRISQVPNSDYSIYSNFNNFPIA 328


>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 337 VNMDTLNARVTFCSPVLYMHLMWNAFVVML 248
           +  D +  R+ + SPVL +   WN  VV++
Sbjct: 74  IKRDIVLCRIFYPSPVLSVRFTWNRLVVLI 103


>SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 298

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
 Frame = +1

Query: 79  LYVKSYSKDDRCRKVVEMPKDEESFVFFTVHFGD----CGLVHVNG 204
           +Y  +YS     +KV+++P D++ FV       D     G+ H+ G
Sbjct: 83  IYPSAYSSATYVKKVLKLPADKKVFVLGEAGIEDELDRVGVAHIGG 128


>SPBC15D4.05 |||conserved protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
 Frame = +1

Query: 112 CRKVVEMPKDEESFVFFTVHFGDCGLVHVNGLAS---FVLVMQTHLKL 246
           C+ +  + KDE    F  +   DC +++   L S     +V QT LK+
Sbjct: 191 CKNIDNILKDESDIGFIQISHADCLILNKTDLISSEALSVVRQTILKI 238


>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 390 IISRSGDQVSPAEIGDNLVLQVDV 461
           +++R G+++SPAEI   L+   DV
Sbjct: 407 LVNRGGEKISPAEIDAVLMQHPDV 430


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +1

Query: 70   NGLLYVKSYSKDDRCRKVVEMPKDEESFVFFTVHFGDCGLVHVNGLASFVLVMQ 231
            + LL VK+    D   ++++  KD+E      V  G+C  VH   + S VL++Q
Sbjct: 2039 SALLEVKNLLPIDLNIRIID--KDQEGVWMSNVGIGECAYVHSINI-SHVLLLQ 2089


>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 91  SYSKDDRCRKVVEMPKDEESFVFFTVHF 174
           SYSK    R V ++P++ + FVF  + +
Sbjct: 304 SYSKTKLGRAVAKLPQNLQPFVFMIIQY 331


>SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -2

Query: 326 HIECKSYVL-FTSFVYAFDVECFCGD 252
           HI+ K  V+  TSF+Y F+   FC D
Sbjct: 227 HIKFKGSVIPATSFIYDFNACVFCDD 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,396,340
Number of Sequences: 5004
Number of extensions: 47489
Number of successful extensions: 136
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)