Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30293X
         (585 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0250 - 2622738-2623328,2626525-2627169,2627701-2627754           30   1.6  
07_01_0067 + 490614-490796,491194-491358                               29   3.6  

>10_01_0250 - 2622738-2623328,2626525-2627169,2627701-2627754
          Length = 429

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 2/98 (2%)
 Frame = +1

Query: 1   PTPDIQVECLADGVRVRLKIKDFNGLLYVKSYSKDDRCRKVVEMPKDEESFVFFTVHFGD 180
           P  +  +  + DG+   +    F  +L   + S+ +R +   E P D  S + F     D
Sbjct: 258 PNKEKTIHWMTDGIIYSVTYAKFAAILGFPARSRTNRVKIHDEKPMDTNS-LHFLYQDVD 316

Query: 181 CGLVHVNGLASFVLVMQTHLKLVTSPQKHSTSN--AYT 288
             L  + GL  F   +   L+   +P++   SN  AYT
Sbjct: 317 YELGTIKGLLPFYAYLNKLLRKTLNPKEGDASNVLAYT 354


>07_01_0067 + 490614-490796,491194-491358
          Length = 115

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 9/96 (9%)
 Frame = +1

Query: 28  LADGVRVRLKIKDFNGLLYVKSYSKDDRCRKVVEMPKDEESFVFFTVHFGD-------CG 186
           L D   V + + +   ++   S S+D    K+  +PKD  S     V + +       CG
Sbjct: 12  LLDNFAVGMSLDEIGTIVINNSISRDRPSLKIRGVPKDVRSCDVERVRYKEQLSTRVGCG 71

Query: 187 LVH--VNGLASFVLVMQTHLKLVTSPQKHSTSNAYT 288
            VH  V  +    +V+  +L   T    HST + +T
Sbjct: 72  RVHRIVENVLDKCIVVAPNLPTKTDNLSHSTGHGWT 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,679,286
Number of Sequences: 37544
Number of extensions: 318390
Number of successful extensions: 756
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)