Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30293X
         (585 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)              29   2.1  
SB_4294| Best HMM Match : DUF622 (HMM E-Value=7)                       29   2.8  
SB_47039| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_32741| Best HMM Match : Filament (HMM E-Value=0.39)                 27   8.5  

>SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)
          Length = 751

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 20/61 (32%), Positives = 26/61 (42%)
 Frame = +1

Query: 13  IQVECLADGVRVRLKIKDFNGLLYVKSYSKDDRCRKVVEMPKDEESFVFFTVHFGDCGLV 192
           I+V C    + VRL ++ F  L        D  C+ VV      E+ VFF V    CG  
Sbjct: 412 IKVICSKHDMEVRLYMEYFERLSIDSLRLSDRACKPVVT----NETLVFFKVPLDGCGTA 467

Query: 193 H 195
           H
Sbjct: 468 H 468


>SB_4294| Best HMM Match : DUF622 (HMM E-Value=7)
          Length = 360

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 30/101 (29%), Positives = 41/101 (40%), Gaps = 5/101 (4%)
 Frame = +3

Query: 186 PCSCQWLSKLRSSNANSSETGNITTKAFHIKCIYKTGEQNVTLAFN---VSMLTTAGTI- 353
           P + Q L+    SN     T  +TT    I C       ++ LA +   ++     G + 
Sbjct: 180 PVAVQSLAMSTQSNLVQGSTRMVTT----IPCSTNNTHNHINLACSSIPIAPAVAVGPVH 235

Query: 354 -ANTGPPPTCSMRIISRSGDQVSPAEIGDNLVLQVDVQPSS 473
            A  G  P C     SRS D  SP    D+L LQV  Q S+
Sbjct: 236 VAPQGQEPQCEEIGESRSSDDSSPGACADSL-LQVPRQASN 275


>SB_47039| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 384

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 154 VFFTVHFGDCGLVHVNGLASF 216
           V+  VHF  CG++ VNG A F
Sbjct: 354 VYGNVHFSTCGMMPVNGNAHF 374


>SB_32741| Best HMM Match : Filament (HMM E-Value=0.39)
          Length = 1814

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +1

Query: 109  RCRKVVEMPKDEESFVFFTVHF-GDCGLVHVNGLASFVLVMQTHLK 243
            RC+K +    +E+  +F   +F GD  L+ + G A+   V+Q+HLK
Sbjct: 1418 RCQKSLNEFLEEKRSLFPRFYFIGDDDLLEILGQATNPTVIQSHLK 1463


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,082,548
Number of Sequences: 59808
Number of extensions: 362836
Number of successful extensions: 980
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)