Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30293X
         (585 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47530.1 68416.m05169 pentatricopeptide (PPR) repeat-containi...    29   2.3  
At5g19160.1 68418.m02281 expressed protein predicted proteins, A...    29   3.0  
At4g25315.1 68417.m03641 Expressed protein                             28   5.3  
At2g29640.1 68415.m03601 josephin family protein contains Pfam d...    27   9.2  

>At3g47530.1 68416.m05169 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 591

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
 Frame = +3

Query: 120 SCRDA*RRRKFCFLHC-TFRR---LRPCSCQWLSKLRSSNANSSETGNITTKAFHIKCIY 287
           SCR   +R      HC T  R   L    C+     RS   NSS   N  + +F +KC  
Sbjct: 65  SCRVFSQRLNPTLSHCNTMIRAFSLSQTPCEGFRLFRSLRRNSSLPANPLSSSFALKCCI 124

Query: 288 KTGE 299
           K+G+
Sbjct: 125 KSGD 128


>At5g19160.1 68418.m02281 expressed protein predicted proteins,
           Arabidopsis thaliana and Oryza sativa; expression
           supported by MPSS
          Length = 464

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 375 TCSMRIISRSGDQVSPAEIGDNLVLQVDVQPSSIY 479
           TC M  +   G  + PAE  D++ L  DV  SS+Y
Sbjct: 345 TCHMETLPDFGASLVPAETWDHIKLLQDVLSSSLY 379


>At4g25315.1 68417.m03641 Expressed protein
          Length = 127

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +3

Query: 195 CQWLSKLRSSNANSSETGNITTKAFHIKCIYKTGE 299
           C W+S+  +  +N  +TGN     + ++  Y+ G+
Sbjct: 27  CYWMSRWSNITSNGDDTGNDLAPFYQMQQYYRVGK 61


>At2g29640.1 68415.m03601 josephin family protein contains Pfam
           domain PF02099: Josephin; similar to Josephin-like
           protein (Swiss-Prot:O82391) [Arabidopsis thaliana]
          Length = 360

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 1/121 (0%)
 Frame = +3

Query: 138 RRRKFCFLHCTFRRLRPCSCQWLSKLRSSNANSSETGNITTKAF-HIKCIYKTGEQNVTL 314
           +R +FC LHC    L      +  +  +S A   ET +   + +  +  + K     +T 
Sbjct: 13  QRLQFCLLHC-LNNLFQDKDAFTKESLNSIAEKLETNDPNKETWTPLSFVLKPHHNTITG 71

Query: 315 AFNVSMLTTAGTIANTGPPPTCSMRIISRSGDQVSPAEIGDNLVLQVDVQPSSIYGGFGR 494
            ++V+++ TA  +   G       + I  S   +  A+    +VL V   P   YGG  R
Sbjct: 72  NYDVNVMITA--LEGKGKSVVWHDKRIGASSIDLDDADTLMGIVLNV---PVKRYGGLWR 126

Query: 495 S 497
           S
Sbjct: 127 S 127


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,598,651
Number of Sequences: 28952
Number of extensions: 254243
Number of successful extensions: 687
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)