Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30292X
         (576 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia nu...    60   3e-08
UniRef50_A0BX75 Cluster: Chromosome undetermined scaffold_134, w...    34   2.8  
UniRef50_Q8YXJ6 Cluster: L-aspartate oxidase; n=15; Cyanobacteri...    33   6.4  
UniRef50_A5C1W6 Cluster: Putative uncharacterized protein; n=1; ...    32   8.4  

>UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia
           nubilalis|Rep: Reverse transcriptase - Ostrinia
           nubilalis (European corn borer)
          Length = 497

 Score = 60.5 bits (140), Expect = 3e-08
 Identities = 29/45 (64%), Positives = 34/45 (75%)
 Frame = -3

Query: 454 SLGRPHPTSWIDDLLRFAGIRCMQAAQDRSLWRGLEEVYVQQ*TS 320
           S+GRP PT W DDL++ AG   MQAAQDRSLW+ L E +VQQ TS
Sbjct: 452 SVGRP-PTRWTDDLVKVAGSTWMQAAQDRSLWKSLGEAFVQQWTS 495


>UniRef50_A0BX75 Cluster: Chromosome undetermined scaffold_134,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_134,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 562

 Score = 33.9 bits (74), Expect = 2.8
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -3

Query: 520 CRTDVAEAETFYSSNRVLEDVGSLGRPHPTSWID-DLLRFAGIRCMQAAQDRSLWRGLE 347
           C+ D+A A T   SN  LE  GS    +   W++ +LLR AG++   +  D   + GLE
Sbjct: 411 CKNDLATALTKQKSNLPLECAGS--SENDFYWLNAELLRMAGVQIPDSVSDELNYNGLE 467


>UniRef50_Q8YXJ6 Cluster: L-aspartate oxidase; n=15;
           Cyanobacteria|Rep: L-aspartate oxidase - Anabaena sp.
           (strain PCC 7120)
          Length = 578

 Score = 32.7 bits (71), Expect = 6.4
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -3

Query: 496 ETFYSSNRVLEDVGSLGRPHPTSWIDDLLRFAGIRCMQAAQDRSLW 359
           E  +S NRVL    + GR   T+  D +LR   I+ +Q A   SLW
Sbjct: 136 EAAHSRNRVLHAADTTGREVTTTLTDQVLRRPNIQVIQQALALSLW 181


>UniRef50_A5C1W6 Cluster: Putative uncharacterized protein; n=1;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 725

 Score = 32.3 bits (70), Expect = 8.4
 Identities = 18/49 (36%), Positives = 21/49 (42%)
 Frame = +1

Query: 286 PNTIYLLSLKPQTFTAGHRPPPSLAITSGPALLACSGSPRTLIGRRSSL 432
           P  IY+  + PQ+FT G  P   L     P    C G P TL    S L
Sbjct: 155 PTVIYVWGIPPQSFTFGASPHCHLCSGHSPFSSLCLGHPPTLESSSSLL 203


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 457,290,464
Number of Sequences: 1657284
Number of extensions: 8567946
Number of successful extensions: 23492
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23481
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 39571085965
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)