Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30292X
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   2.6  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    27   2.6  
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    27   2.6  
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    26   3.4  
SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing] |Schizosacch...    25   6.0  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    25   6.0  
SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces po...    25   6.0  

>SPBC354.08c |||DUF221 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 865

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -1

Query: 300 IDSVRALFMLMLFCITDKFKKYIVLYVN 217
           I+ +  LF  +LFC+    +KYI++YV+
Sbjct: 596 INPLVLLFASVLFCVNYLTQKYILMYVS 623


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 461  VFQYAVATIERFSLSDIGSTISIFLTSNLSLVYLF 565
            VF+ A+ T+E F L+D      + L+S ++ V LF
Sbjct: 938  VFEPALHTVENFDLTDCADEQILLLSSFVNFVPLF 972


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
 Frame = +2

Query: 242 LNLSVMQNNININNALTLSIFYL*SHRRSLLDIDLLQASP*RAVLRCLHAADPR---EP* 412
           +NLS   NN++ N + TL  + L S R S     +  A+  +++   ++ ++P    E  
Sbjct: 280 VNLSASTNNLSTNTSGTLKPYSLSSSRSSSYSKGVNSAASLQSIWETMNNSNPSVIPEST 339

Query: 413 *VVDPACRVRS-TQATYVFQYAVATIERFSLSDIGSTISIFLTSNLSL 553
              +PA R R  ++   V+ + V  I++  +S+     SIFL   L +
Sbjct: 340 SSREPAARYRKISERNAVYDWNV-IIDKIIVSN-DQQSSIFLQQKLKI 385


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
 Frame = +1

Query: 313 KPQTFTAGHRPPPSLAITSGPALLACSGSPRTLIG--------RRSSL*GEVYPSYLRL 465
           K  T   G +  PSL +    A   C G  R+++G         RS   G++ PS LRL
Sbjct: 64  KYYTIAQGKQMRPSLVLLMSKATSLCHGIDRSVVGDKYIDDDDLRSFSTGQILPSQLRL 122


>SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing]
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 237

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -2

Query: 350 GGGLCPAVNVCGFKD-RR*IVLGHYLC*CCFA*QINLKNIL 231
           GG L   V+ CGF+D  R     HYL     A    LKNIL
Sbjct: 95  GGSLYQNVSSCGFRDIHRPSKPRHYLAHKVMAKPGKLKNIL 135


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 535 KKNRYCRTDVAEAETFYSSNRVLEDVGSLGRPH 437
           KKN + R   +  +   S  R  +++ SLGRPH
Sbjct: 96  KKNNFYRRSSSTDDFGISHARSRKEIQSLGRPH 128


>SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 454 YLRLPVRGCYYRTF 495
           YLR+P  G YYR F
Sbjct: 338 YLRIPKEGLYYRNF 351


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,935,551
Number of Sequences: 5004
Number of extensions: 36566
Number of successful extensions: 79
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)