BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30292X (576 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_54883| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3 SB_23356| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3 >SB_54883| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2070 Score = 27.9 bits (59), Expect = 6.3 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = +1 Query: 391 SGSPRTLIGRRSSL*GEVYPSYLRLPVRGCYY 486 S P+ +G+RS EVYP+Y + V G ++ Sbjct: 764 SSLPKPCMGKRSKKYPEVYPNYESVSVPGMFF 795 Score = 27.9 bits (59), Expect = 6.3 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = +1 Query: 391 SGSPRTLIGRRSSL*GEVYPSYLRLPVRGCYY 486 S P+ +G+RS EVYP+Y + V G ++ Sbjct: 1788 SSLPKPCMGKRSKKYPEVYPNYESVSVPGMFF 1819 >SB_23356| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 190 Score = 27.9 bits (59), Expect = 6.3 Identities = 11/33 (33%), Positives = 21/33 (63%) Frame = -3 Query: 409 RFAGIRCMQAAQDRSLWRGLEEVYVQQ*TSVAL 311 R + + CM++A +RSL++G E ++ S A+ Sbjct: 29 RHSNVLCMRSADERSLYKGKESTHMLNNISYAI 61 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,048,924 Number of Sequences: 59808 Number of extensions: 258163 Number of successful extensions: 607 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 535 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 607 length of database: 16,821,457 effective HSP length: 78 effective length of database: 12,156,433 effective search space used: 1373676929 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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