Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30292X
         (576 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    29   0.025
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    25   0.54 
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   3.8  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   3.8  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   5.0  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   5.0  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   5.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.7  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 29.5 bits (63), Expect = 0.025
 Identities = 14/19 (73%), Positives = 15/19 (78%)
 Frame = -2

Query: 389 HASSAGPLVMARLGGGLCP 333
           HASSA PL+ A L GGLCP
Sbjct: 520 HASSA-PLLAATLAGGLCP 537


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 280 IYVNVVLHNR*I*KIYCFVCK*IRKIISLFQ 188
           + +NV+LH +    + CFVCK I    +L++
Sbjct: 13  VIINVLLHGQ----VICFVCKDITSTSALYR 39


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 200 NYFANSFTYKTIYFLNLSVMQNNIN 274
           NY  N+  YK +Y  N   +  NIN
Sbjct: 88  NYNYNNNNYKKLYCNNYKKLYYNIN 112


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 200 NYFANSFTYKTIYFLNLSVMQNNIN 274
           NY  N+  YK +Y  N   +  NIN
Sbjct: 88  NYNYNNNNYKKLYCNNYKKLYYNIN 112


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 200 NYFANSFTYKTIYFLNLSVMQNNIN 274
           NY  N+  YK +Y  N   +  NIN
Sbjct: 88  NYNYNNNNYKKLYCNNYRKLYYNIN 112


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 236 YFLNLSVMQNNININNALTLSIFYL 310
           Y  N+S   NN N N  L  +I Y+
Sbjct: 89  YISNISNYNNNNNYNKKLYYNINYI 113


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 236 YFLNLSVMQNNININNALTLSIFYL 310
           Y  N+S   NN N N  L  +I Y+
Sbjct: 327 YISNISNYNNNNNYNKKLYYNINYI 351


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 395 PLHASSAGPLVMARLGG 345
           PLH     PL+   LGG
Sbjct: 330 PLHVEVTPPLLSVHLGG 346


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 395 PLHASSAGPLVMARLGG 345
           PLH     PL+   LGG
Sbjct: 330 PLHVEVTPPLLSVHLGG 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,889
Number of Sequences: 438
Number of extensions: 2858
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)