Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30291
         (471 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein L30|Sc...    88   6e-19
SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein L30|Sc...    85   7e-18
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...    29   0.27 
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    26   2.5  
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    25   5.8  

>SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 109

 Score = 88.2 bits (209), Expect = 6e-19
 Identities = 41/81 (50%), Positives = 55/81 (67%)
 Frame = +2

Query: 161 GKILLRIQANFENSSTRQSKAGYHR*KCSSARKSEIEYYALLAKTGVHHYSGNNIELGTA 340
           GK +L  ++  +   + ++K       C   RKSE+EYYA+L+K  VHHY+G NI+LGTA
Sbjct: 27  GKYVLGYKSTLKTLRSGKAKLILIAGNCPPLRKSELEYYAMLSKANVHHYAGTNIDLGTA 86

Query: 341 CGKYYRVCTLAITDPGDSDII 403
           CGK +RV  LAITD GDSDI+
Sbjct: 87  CGKLFRVGVLAITDAGDSDIL 107



 Score = 80.2 bits (189), Expect = 1e-16
 Identities = 37/54 (68%), Positives = 44/54 (81%)
 Frame = +3

Query: 93  VAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPL 254
           V  KK KK+ ++IN++LAL MKSGKY LGYK TLKTLR GKAKL++IA N PPL
Sbjct: 4   VVTKKSKKSGDTINAKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAGNCPPL 57


>SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein
           L30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 84.6 bits (200), Expect = 7e-18
 Identities = 40/58 (68%), Positives = 47/58 (81%)
 Frame = +3

Query: 81  APKMVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPL 254
           AP    +KK KK+ ++INS+LAL MKSGKY LGYK TLKTLR GKAKL++IA NAPPL
Sbjct: 8   APVAAVSKKGKKSGDTINSKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAANAPPL 65



 Score = 83.8 bits (198), Expect = 1e-17
 Identities = 39/81 (48%), Positives = 54/81 (66%)
 Frame = +2

Query: 161 GKILLRIQANFENSSTRQSKAGYHR*KCSSARKSEIEYYALLAKTGVHHYSGNNIELGTA 340
           GK +L  ++  +   + ++K           RKSE+EYYA+L++  VHHYSGNNI+LGTA
Sbjct: 35  GKYVLGYKSTLKTLRSGKAKLILIAANAPPLRKSELEYYAMLSRCSVHHYSGNNIDLGTA 94

Query: 341 CGKYYRVCTLAITDPGDSDII 403
           CGK +RV  LA+ D GDSDI+
Sbjct: 95  CGKLFRVGVLAVIDAGDSDIL 115


>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score = 29.5 bits (63), Expect = 0.27
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = +3

Query: 105 KQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVI 230
           ++KK I+     ++L   SGKYC G   T+  L++G  + ++
Sbjct: 279 QEKKLIQRFFDEISL--DSGKYCFGVVDTMNALQEGAVETLL 318


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 17/58 (29%), Positives = 32/58 (55%)
 Frame = +3

Query: 81  APKMVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPL 254
           APK +  KK  KT++  + +  ++        G K+ +K +R+G+  LVI+A +  P+
Sbjct: 33  APKKLN-KKMMKTVKKASKQKHILR-------GVKEVVKAVRKGEKGLVILAGDISPM 82


>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 104 LCCNHFGSVNANESSPRAQMEK 39
           + C+H  S+NAN S+ RA M +
Sbjct: 146 VACDHEFSINANVSAARALMNR 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,762,496
Number of Sequences: 5004
Number of extensions: 33200
Number of successful extensions: 69
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)