Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30291
(471 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0300 + 23932947-23933196,23934022-23934123,23934249-239343... 100 5e-22
01_06_1103 - 34543915-34543955,34544069-34544137,34544294-345443... 99 2e-21
01_01_1199 - 9657169-9657254,9657369-9657395,9657485-9657553,965... 97 6e-21
03_05_0830 + 28034179-28035492 29 1.9
11_01_0682 - 5575297-5575308,5575391-5575516,5575779-5575885,557... 28 3.3
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 27 5.8
08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,893... 27 7.6
07_03_1085 - 23851852-23853165 27 7.6
>05_05_0300 +
23932947-23933196,23934022-23934123,23934249-23934317,
23934406-23934446
Length = 153
Score = 100 bits (240), Expect = 5e-22
Identities = 42/58 (72%), Positives = 47/58 (81%)
Frame = +2
Query: 242 CSSARKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLP 415
C RKSEIEYYA+L K VHH+ GNN++LGTACGKYYRVC L+I DPGDSDII T P
Sbjct: 93 CPPLRKSEIEYYAMLGKVSVHHFHGNNVDLGTACGKYYRVCCLSIIDPGDSDIINTTP 150
Score = 74.1 bits (174), Expect = 5e-14
Identities = 34/54 (62%), Positives = 41/54 (75%)
Frame = +3
Query: 93 VAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPL 254
V A QKK+ ++IN++L LVMKSGKY LGYK LKTLR K KL+I+A N PPL
Sbjct: 43 VVAMMQKKSTDNINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLIILANNCPPL 96
>01_06_1103 -
34543915-34543955,34544069-34544137,34544294-34544395,
34545603-34545708,34545998-34546079,34546850-34547142
Length = 230
Score = 98.7 bits (235), Expect = 2e-21
Identities = 40/60 (66%), Positives = 49/60 (81%)
Frame = +2
Query: 242 CSSARKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLPEA 421
C RKSEIEYYA+L K V+H++GNN++LGTACGKYYRVC L++ DPGDSDI LPE+
Sbjct: 170 CPPLRKSEIEYYAMLGKVSVYHFNGNNVDLGTACGKYYRVCCLSVVDPGDSDITKQLPES 229
Score = 70.9 bits (166), Expect = 5e-13
Identities = 33/48 (68%), Positives = 36/48 (75%)
Frame = +3
Query: 111 KKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPL 254
KK E IN++L LVMKSGKY LGYK LKTLR K KLVI+A N PPL
Sbjct: 126 KKNAEGINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLVIVANNCPPL 173
>01_01_1199 -
9657169-9657254,9657369-9657395,9657485-9657553,
9657922-9658023,9659895-9660000,9660145-9660165
Length = 136
Score = 97.1 bits (231), Expect = 6e-21
Identities = 41/56 (73%), Positives = 47/56 (83%)
Frame = +2
Query: 242 CSSARKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITT 409
C RKSEIEYYA+LAK VHH+ GNN++LGTACGKY+RVC L+I DPGDSDII T
Sbjct: 52 CPPLRKSEIEYYAMLAKVTVHHFHGNNVDLGTACGKYFRVCCLSIIDPGDSDIIKT 107
Score = 80.6 bits (190), Expect = 6e-16
Identities = 38/55 (69%), Positives = 45/55 (81%)
Frame = +3
Query: 90 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPL 254
MVAAKK KK+ ++IN++L LVMKSGKY LGYK L+TLR KAKLVII+ N PPL
Sbjct: 1 MVAAKKTKKSTDNINNKLQLVMKSGKYTLGYKTVLRTLRNSKAKLVIISNNCPPL 55
>03_05_0830 + 28034179-28035492
Length = 437
Score = 29.1 bits (62), Expect = 1.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 159 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 242
+GKY G TLKTL G + +I+ +N
Sbjct: 299 TGKYVFGVDDTLKTLEMGAVETLIVWEN 326
>11_01_0682 -
5575297-5575308,5575391-5575516,5575779-5575885,
5575911-5576013,5576122-5576187,5576378-5576461,
5577448-5577522,5577615-5577668,5577752-5577895,
5578632-5578685,5578877-5578981,5579076-5579173,
5579660-5579729,5580444-5580566,5580647-5580727,
5580996-5581476,5581684-5581816,5582550-5582598,
5582704-5582892,5583642-5583703,5583762-5585316
Length = 1256
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = +3
Query: 189 TLKTLRQGKAKLVIIAKNAPPLGN 260
TLK LR G K+V + KN+ P GN
Sbjct: 524 TLKMLRVGILKVVSLTKNSVPTGN 547
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 27.5 bits (58), Expect = 5.8
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Frame = +3
Query: 141 LALVMKSGKY-CL--GYKQTLKTLRQGKAKLVIIAKNAPPL 254
L LV ++ + CL G K+ +K++R+G+ L IIA N P+
Sbjct: 33 LKLVRRASEAKCLKRGVKEVVKSIRRGQKGLCIIAGNISPI 73
>08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,
8939751-8939817,8940421-8940724,8942993-8942996,
8944539-8946449
Length = 1387
Score = 27.1 bits (57), Expect = 7.6
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +3
Query: 93 VAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAP 248
V++ Q +ES+ + L V SG Y LG+KQ L+T +G I+ P
Sbjct: 1333 VSSSLQFSGLESMET-LKEVWLSGSYELGFKQQLETELKGNENEPILELEKP 1383
>07_03_1085 - 23851852-23853165
Length = 437
Score = 27.1 bits (57), Expect = 7.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 159 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 242
+GKY G TLK L G + +I+ +N
Sbjct: 299 TGKYVFGVDDTLKALEMGAVETLIVWEN 326
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,715,645
Number of Sequences: 37544
Number of extensions: 219465
Number of successful extensions: 508
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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