Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30291
         (471 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40337| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=7.3e-31)       105   2e-23
SB_21661| Best HMM Match : EGF_CA (HMM E-Value=0)                      28   3.4  
SB_29957| Best HMM Match : Pro_racemase (HMM E-Value=0)                27   5.9  

>SB_40337| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=7.3e-31)
          Length = 108

 Score =  105 bits (252), Expect = 2e-23
 Identities = 49/85 (57%), Positives = 61/85 (71%)
 Frame = +2

Query: 161 GKILLRIQANFENSSTRQSKAGYHR*KCSSARKSEIEYYALLAKTGVHHYSGNNIELGTA 340
           GK  L +++  +     ++K           RKSEIEYYA+LAKTGVHHY+GNNIELGTA
Sbjct: 15  GKFTLGLKSTLKTLRQGKAKLVIIANNTPQLRKSEIEYYAMLAKTGVHHYTGNNIELGTA 74

Query: 341 CGKYYRVCTLAITDPGDSDIITTLP 415
           CGKY+RV  L+ITDPGDSDII ++P
Sbjct: 75  CGKYFRVSVLSITDPGDSDIIRSMP 99



 Score = 74.5 bits (175), Expect = 4e-14
 Identities = 37/45 (82%), Positives = 39/45 (86%)
 Frame = +3

Query: 120 IESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPL 254
           +ESINSRLALVMKSGK+ LG K TLKTLRQGKAKLVIIA N P L
Sbjct: 1   MESINSRLALVMKSGKFTLGLKSTLKTLRQGKAKLVIIANNTPQL 45


>SB_21661| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 1202

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +3

Query: 363 AHSPSQTLVTRTLSPLC 413
           AHSP+ TL+T TL+P C
Sbjct: 152 AHSPATTLITVTLTPNC 168


>SB_29957| Best HMM Match : Pro_racemase (HMM E-Value=0)
          Length = 576

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
 Frame = +2

Query: 308 YSGNNIEL--GTA-CGKYYRVCTLAITDPGDSD 397
           ++GN I+L  G A CGKYY +C  A ++ GD D
Sbjct: 101 HTGNPIQLPYGLAWCGKYYNMCDNA-SNSGDVD 132


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,505,728
Number of Sequences: 59808
Number of extensions: 255085
Number of successful extensions: 712
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)