Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30291
(471 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X79238-1|CAA55820.1| 115|Homo sapiens ribosomal protein L30 pro... 117 2e-26
L05095-1|AAC15858.1| 115|Homo sapiens ribosomal protein L30 pro... 117 2e-26
BC095426-1|AAH95426.1| 115|Homo sapiens ribosomal protein L30 p... 117 2e-26
BC032700-1|AAH32700.1| 115|Homo sapiens ribosomal protein L30 p... 117 2e-26
AB070559-1|BAB79491.1| 115|Homo sapiens ribosomal protein L30 p... 117 2e-26
X81625-1|CAA57281.1| 437|Homo sapiens C11 protein protein. 33 0.38
U90176-1|AAB49726.1| 437|Homo sapiens eukaryotic release factor... 33 0.38
BT007374-1|AAP36038.1| 404|Homo sapiens eukaryotic translation ... 33 0.38
BC088358-1|AAH88358.1| 437|Homo sapiens eukaryotic translation ... 33 0.38
BC014269-1|AAH14269.1| 404|Homo sapiens ETF1 protein protein. 33 0.38
AF095901-1|AAD43966.1| 437|Homo sapiens eRF1 protein. 33 0.38
Y15635-1|CAA75729.1| 2273|Homo sapiens ABCR protein. 31 2.7
U88667-1|AAC51144.1| 2273|Homo sapiens ATP-binding cassette tran... 31 2.7
AF001945-1|AAC05632.1| 2273|Homo sapiens rim ABC transporter pro... 31 2.7
AF000148-1|AAC23915.1| 2273|Homo sapiens ATP-binding cassette tr... 31 2.7
AB210040-1|BAE06122.1| 2303|Homo sapiens ABCA4 variant protein p... 31 2.7
>X79238-1|CAA55820.1| 115|Homo sapiens ribosomal protein L30
protein.
Length = 115
Score = 117 bits (282), Expect = 2e-26
Identities = 51/59 (86%), Positives = 55/59 (93%)
Frame = +2
Query: 242 CSSARKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLPE 418
C + RKSEIEYYA+LAKTGVHHYSGNNIELGTACGKYYRVCTLAI DPGDSDII ++PE
Sbjct: 52 CPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPE 110
Score = 90.6 bits (215), Expect = 2e-18
Identities = 44/55 (80%), Positives = 48/55 (87%)
Frame = +3
Query: 90 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPL 254
MVAAKK KK++ESINSRL LVMKSGKY LGYKQTLK +RQGKAKLVI+A N P L
Sbjct: 1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPAL 55
>L05095-1|AAC15858.1| 115|Homo sapiens ribosomal protein L30
protein.
Length = 115
Score = 117 bits (282), Expect = 2e-26
Identities = 51/59 (86%), Positives = 55/59 (93%)
Frame = +2
Query: 242 CSSARKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLPE 418
C + RKSEIEYYA+LAKTGVHHYSGNNIELGTACGKYYRVCTLAI DPGDSDII ++PE
Sbjct: 52 CPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPE 110
Score = 90.6 bits (215), Expect = 2e-18
Identities = 44/55 (80%), Positives = 48/55 (87%)
Frame = +3
Query: 90 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPL 254
MVAAKK KK++ESINSRL LVMKSGKY LGYKQTLK +RQGKAKLVI+A N P L
Sbjct: 1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPAL 55
>BC095426-1|AAH95426.1| 115|Homo sapiens ribosomal protein L30
protein.
Length = 115
Score = 117 bits (282), Expect = 2e-26
Identities = 51/59 (86%), Positives = 55/59 (93%)
Frame = +2
Query: 242 CSSARKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLPE 418
C + RKSEIEYYA+LAKTGVHHYSGNNIELGTACGKYYRVCTLAI DPGDSDII ++PE
Sbjct: 52 CPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPE 110
Score = 90.6 bits (215), Expect = 2e-18
Identities = 44/55 (80%), Positives = 48/55 (87%)
Frame = +3
Query: 90 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPL 254
MVAAKK KK++ESINSRL LVMKSGKY LGYKQTLK +RQGKAKLVI+A N P L
Sbjct: 1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPAL 55
>BC032700-1|AAH32700.1| 115|Homo sapiens ribosomal protein L30
protein.
Length = 115
Score = 117 bits (282), Expect = 2e-26
Identities = 51/59 (86%), Positives = 55/59 (93%)
Frame = +2
Query: 242 CSSARKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLPE 418
C + RKSEIEYYA+LAKTGVHHYSGNNIELGTACGKYYRVCTLAI DPGDSDII ++PE
Sbjct: 52 CPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPE 110
Score = 90.6 bits (215), Expect = 2e-18
Identities = 44/55 (80%), Positives = 48/55 (87%)
Frame = +3
Query: 90 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPL 254
MVAAKK KK++ESINSRL LVMKSGKY LGYKQTLK +RQGKAKLVI+A N P L
Sbjct: 1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPAL 55
>AB070559-1|BAB79491.1| 115|Homo sapiens ribosomal protein L30
protein.
Length = 115
Score = 117 bits (282), Expect = 2e-26
Identities = 51/59 (86%), Positives = 55/59 (93%)
Frame = +2
Query: 242 CSSARKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLPE 418
C + RKSEIEYYA+LAKTGVHHYSGNNIELGTACGKYYRVCTLAI DPGDSDII ++PE
Sbjct: 52 CPALRKSEIEYYAMLAKTGVHHYSGNNIELGTACGKYYRVCTLAIIDPGDSDIIRSMPE 110
Score = 90.6 bits (215), Expect = 2e-18
Identities = 44/55 (80%), Positives = 48/55 (87%)
Frame = +3
Query: 90 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPL 254
MVAAKK KK++ESINSRL LVMKSGKY LGYKQTLK +RQGKAKLVI+A N P L
Sbjct: 1 MVAAKKTKKSLESINSRLQLVMKSGKYVLGYKQTLKMIRQGKAKLVILANNCPAL 55
>X81625-1|CAA57281.1| 437|Homo sapiens C11 protein protein.
Length = 437
Score = 33.5 bits (73), Expect = 0.38
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 159 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 242
+GKYC G + TLK L G +++I+ +N
Sbjct: 298 TGKYCFGVEDTLKALEMGAVEILIVYEN 325
>U90176-1|AAB49726.1| 437|Homo sapiens eukaryotic release factor 1
protein.
Length = 437
Score = 33.5 bits (73), Expect = 0.38
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 159 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 242
+GKYC G + TLK L G +++I+ +N
Sbjct: 298 TGKYCFGVEDTLKALEMGAVEILIVYEN 325
>BT007374-1|AAP36038.1| 404|Homo sapiens eukaryotic translation
termination factor 1 protein.
Length = 404
Score = 33.5 bits (73), Expect = 0.38
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 159 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 242
+GKYC G + TLK L G +++I+ +N
Sbjct: 265 TGKYCFGVEDTLKALEMGAVEILIVYEN 292
>BC088358-1|AAH88358.1| 437|Homo sapiens eukaryotic translation
termination factor 1 protein.
Length = 437
Score = 33.5 bits (73), Expect = 0.38
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 159 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 242
+GKYC G + TLK L G +++I+ +N
Sbjct: 298 TGKYCFGVEDTLKALEMGAVEILIVYEN 325
>BC014269-1|AAH14269.1| 404|Homo sapiens ETF1 protein protein.
Length = 404
Score = 33.5 bits (73), Expect = 0.38
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 159 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 242
+GKYC G + TLK L G +++I+ +N
Sbjct: 265 TGKYCFGVEDTLKALEMGAVEILIVYEN 292
>AF095901-1|AAD43966.1| 437|Homo sapiens eRF1 protein.
Length = 437
Score = 33.5 bits (73), Expect = 0.38
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 159 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 242
+GKYC G + TLK L G +++I+ +N
Sbjct: 298 TGKYCFGVEDTLKALEMGAVEILIVYEN 325
>Y15635-1|CAA75729.1| 2273|Homo sapiens ABCR protein.
Length = 2273
Score = 30.7 bits (66), Expect = 2.7
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = +2
Query: 191 FENSSTRQSKAGYHR*KCSSARKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTL 370
F + + + Y + K S ++++E A+L TG+HH N E G R ++
Sbjct: 1015 FHHLTVAEHMLFYAQLKGKSQEEAQLEMEAMLEDTGLHH--KRNEEAQDLSGGMQRKLSV 1072
Query: 371 AITDPGDSDII 403
AI GD+ ++
Sbjct: 1073 AIAFVGDAKVV 1083
>U88667-1|AAC51144.1| 2273|Homo sapiens ATP-binding cassette
transporter protein.
Length = 2273
Score = 30.7 bits (66), Expect = 2.7
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = +2
Query: 191 FENSSTRQSKAGYHR*KCSSARKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTL 370
F + + + Y + K S ++++E A+L TG+HH N E G R ++
Sbjct: 1015 FHHLTVAEHMLFYAQLKGKSQEEAQLEMEAMLEDTGLHH--KRNEEAQDLSGGMQRKLSV 1072
Query: 371 AITDPGDSDII 403
AI GD+ ++
Sbjct: 1073 AIAFVGDAKVV 1083
>AF001945-1|AAC05632.1| 2273|Homo sapiens rim ABC transporter protein.
Length = 2273
Score = 30.7 bits (66), Expect = 2.7
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = +2
Query: 191 FENSSTRQSKAGYHR*KCSSARKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTL 370
F + + + Y + K S ++++E A+L TG+HH N E G R ++
Sbjct: 1015 FHHLTVAEHMLFYAQLKGKSQEEAQLEMEAMLEDTGLHH--KRNEEAQDLSGGMQRKLSV 1072
Query: 371 AITDPGDSDII 403
AI GD+ ++
Sbjct: 1073 AIAFVGDAKVV 1083
>AF000148-1|AAC23915.1| 2273|Homo sapiens ATP-binding cassette
transporter protein.
Length = 2273
Score = 30.7 bits (66), Expect = 2.7
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = +2
Query: 191 FENSSTRQSKAGYHR*KCSSARKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTL 370
F + + + Y + K S ++++E A+L TG+HH N E G R ++
Sbjct: 1015 FHHLTVAEHMLFYAQLKGKSQEEAQLEMEAMLEDTGLHH--KRNEEAQDLSGGMQRKLSV 1072
Query: 371 AITDPGDSDII 403
AI GD+ ++
Sbjct: 1073 AIAFVGDAKVV 1083
>AB210040-1|BAE06122.1| 2303|Homo sapiens ABCA4 variant protein
protein.
Length = 2303
Score = 30.7 bits (66), Expect = 2.7
Identities = 19/71 (26%), Positives = 34/71 (47%)
Frame = +2
Query: 191 FENSSTRQSKAGYHR*KCSSARKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTL 370
F + + + Y + K S ++++E A+L TG+HH N E G R ++
Sbjct: 1045 FHHLTVAEHMLFYAQLKGKSQEEAQLEMEAMLEDTGLHH--KRNEEAQDLSGGMQRKLSV 1102
Query: 371 AITDPGDSDII 403
AI GD+ ++
Sbjct: 1103 AIAFVGDAKVV 1113
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,919,566
Number of Sequences: 237096
Number of extensions: 1201740
Number of successful extensions: 2266
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2266
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4099895856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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