Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30291
         (471 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032631-5|CAA21573.1|  113|Caenorhabditis elegans Hypothetical ...   104   3e-23
L17337-6|AAA28221.2|   44|Caenorhabditis elegans Hypothetical pr...    32   0.24 
Z82277-3|CAB05249.2|  495|Caenorhabditis elegans Hypothetical pr...    30   0.96 
AF016655-4|AAY55854.1|  144|Caenorhabditis elegans Hypothetical ...    28   3.9  
U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain, un...    27   6.8  
AF040652-7|AAB95017.1|  210|Caenorhabditis elegans Hypothetical ...    27   9.0  

>AL032631-5|CAA21573.1|  113|Caenorhabditis elegans Hypothetical
           protein Y106G6H.3 protein.
          Length = 113

 Score =  104 bits (250), Expect = 3e-23
 Identities = 45/57 (78%), Positives = 52/57 (91%)
 Frame = +2

Query: 254 RKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLPEAS 424
           RKSEIEYYA+LAKTGVHHY+GNNIELGTACG+ +RVCTLA+TD GDSDII ++P  S
Sbjct: 56  RKSEIEYYAMLAKTGVHHYNGNNIELGTACGRLFRVCTLAVTDAGDSDIILSVPSES 112



 Score = 78.2 bits (184), Expect = 3e-15
 Identities = 37/55 (67%), Positives = 44/55 (80%)
 Frame = +3

Query: 90  MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPL 254
           M  A K +K  E+INSRL++VMK+G+Y LGYKQTLK+L  GKAKLVIIA N PPL
Sbjct: 1   MAPAAKPQKNAENINSRLSMVMKTGQYVLGYKQTLKSLLNGKAKLVIIANNTPPL 55


>L17337-6|AAA28221.2|   44|Caenorhabditis elegans Hypothetical
           protein ZK686.1 protein.
          Length = 44

 Score = 31.9 bits (69), Expect = 0.24
 Identities = 17/32 (53%), Positives = 23/32 (71%)
 Frame = +3

Query: 147 LVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKN 242
           +VMK+G+Y L Y+Q LK+L    AKLVI  K+
Sbjct: 1   MVMKTGQYVL-YEQKLKSLLNENAKLVINTKH 31


>Z82277-3|CAB05249.2|  495|Caenorhabditis elegans Hypothetical
           protein LLC1.3 protein.
          Length = 495

 Score = 29.9 bits (64), Expect = 0.96
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +3

Query: 63  GFISIYAPKMVAAKKQKKTIESINSRLALV 152
           GF +I  P  V AKK   ++E+IN+R  L+
Sbjct: 138 GFATIVGPNTVQAKKNDGSVETINARNILI 167


>AF016655-4|AAY55854.1|  144|Caenorhabditis elegans Hypothetical
           protein C17F4.11 protein.
          Length = 144

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
 Frame = +2

Query: 248 SARKSEIEY-YALLAKT-GVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLPEA 421
           +ARK  + + Y +  KT GV HY GN  +L +   K+ R   +   +   +D + TL  A
Sbjct: 30  NARKPVLVFGYPVSNKTKGVVHYEGNEFDLRSFLKKFNRQMEIFFKESESNDWLFTLYNA 89


>U80848-3|AAB37988.1| 2098|Caenorhabditis elegans Heavy chain,
           unconventional myosinprotein 6 protein.
          Length = 2098

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +2

Query: 272 YYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSD 397
           +Y LLA  G+     + +ELGTA   YY +    +T  G  D
Sbjct: 252 FYCLLA--GLSREEKSELELGTAADYYYLIQGKTLTAEGRDD 291


>AF040652-7|AAB95017.1|  210|Caenorhabditis elegans Hypothetical
           protein T05A8.6 protein.
          Length = 210

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +3

Query: 273 TTPS*LRQVFTTTAGTTLN*EQHAENTTECAHSPSQTLVTRTLSPLC 413
           T P  ++ V TTT G T      A  TT+     + T  T T +P C
Sbjct: 63  TKPVRVKPVLTTTPGATTVTTTTAPTTTKAPDCTTTTAPTTTKAPDC 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,970,097
Number of Sequences: 27780
Number of extensions: 194025
Number of successful extensions: 465
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)