Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30291
         (471 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77940.1 68414.m09083 60S ribosomal protein L30 (RPL30B) simi...    99   8e-22
At3g18740.1 68416.m02379 60S ribosomal protein L30 (RPL30C) simi...    99   1e-21
At1g36240.1 68414.m04505 60S ribosomal protein L30 (RPL30A) simi...    98   2e-21
At3g02300.1 68416.m00212 regulator of chromosome condensation (R...    28   2.8  
At3g26618.1 68416.m03325 eukaryotic release factor 1 family prot...    28   3.7  
At1g12920.1 68414.m01500 eukaryotic release factor 1 family prot...    27   4.8  
At4g18820.1 68417.m02778 expressed protein                             27   6.4  

>At1g77940.1 68414.m09083 60S ribosomal protein L30 (RPL30B) similar
           to ribosomal protein L30 GI:388034 from [Homo sapiens]
          Length = 112

 Score =   99 bits (238), Expect = 8e-22
 Identities = 41/58 (70%), Positives = 50/58 (86%)
 Frame = +2

Query: 242 CSSARKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLP 415
           C   R+SEIEYYA+LAK GVHHY+GNN++LGTACGKY+RV  L+I DPGDSDII ++P
Sbjct: 52  CPPLRRSEIEYYAMLAKVGVHHYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSIP 109



 Score = 77.4 bits (182), Expect = 5e-15
 Identities = 37/55 (67%), Positives = 42/55 (76%)
 Frame = +3

Query: 90  MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPL 254
           MV  KK KK+ E INSRLALVMKSGKY LGYK  LK+LR  K KL++I+ N PPL
Sbjct: 1   MVTEKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRGSKGKLILISTNCPPL 55


>At3g18740.1 68416.m02379 60S ribosomal protein L30 (RPL30C) similar
           to 60S RIBOSOMAL PROTEIN L30 GB:O49884 from [Lupinus
           luteus]
          Length = 112

 Score = 99.1 bits (236), Expect = 1e-21
 Identities = 42/58 (72%), Positives = 49/58 (84%)
 Frame = +2

Query: 242 CSSARKSEIEYYALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLP 415
           C   R+SEIEYYA+LAK GVH Y+GNN++LGTACGKY+RV  L+I DPGDSDII TLP
Sbjct: 52  CPPLRRSEIEYYAMLAKVGVHRYNGNNVDLGTACGKYFRVSCLSIVDPGDSDIIKTLP 109



 Score = 80.2 bits (189), Expect = 6e-16
 Identities = 38/55 (69%), Positives = 43/55 (78%)
 Frame = +3

Query: 90  MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPL 254
           MVA KK KK+ E INSRLALVMKSGKY LGYK  LK+LR  K KL++I+ N PPL
Sbjct: 1   MVAEKKAKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPL 55


>At1g36240.1 68414.m04505 60S ribosomal protein L30 (RPL30A) similar
           to GI:6984132 from [Euphorbia esula]
          Length = 112

 Score = 98.3 bits (234), Expect = 2e-21
 Identities = 49/106 (46%), Positives = 67/106 (63%)
 Frame = +2

Query: 98  SKETEKDHRVN*LPPCFGDEIGKILLRIQANFENSSTRQSKAGYHR*KCSSARKSEIEYY 277
           +K+T+K H           + GK  L  ++  ++  + + K       C   R+SEIEYY
Sbjct: 4   AKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPLRRSEIEYY 63

Query: 278 ALLAKTGVHHYSGNNIELGTACGKYYRVCTLAITDPGDSDIITTLP 415
           A+LAK GVHHY+ NN++LGTACGKY+RV  L+I DPGDSDII +LP
Sbjct: 64  AMLAKVGVHHYNRNNVDLGTACGKYFRVSCLSIVDPGDSDIIKSLP 109



 Score = 82.2 bits (194), Expect = 2e-16
 Identities = 39/55 (70%), Positives = 44/55 (80%)
 Frame = +3

Query: 90  MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPL 254
           MVAAKK KK+ E INSRLALVMKSGKY LGYK  LK+LR  K KL++I+ N PPL
Sbjct: 1   MVAAKKTKKSHEGINSRLALVMKSGKYTLGYKSVLKSLRSSKGKLILISSNCPPL 55


>At3g02300.1 68416.m00212 regulator of chromosome condensation
           (RCC1) family protein weak similarity to UVB-resistance
           protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
           Pfam profile PF00415: Regulator of chromosome
           condensation (RCC1)
          Length = 471

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 120 IESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPP 251
           I  +   +++  KS  Y  GY Q+ +T R  + KL+ I K  PP
Sbjct: 7   IGEVAPSVSIPTKSAIYVWGYNQSGQTGRNEQEKLLRIPKQLPP 50


>At3g26618.1 68416.m03325 eukaryotic release factor 1 family protein
           / eRF1 family protein contains Pfam profiles: PF03463
           eRF1 domain 1, PF03464 eRF1 domain 2, PF03465 eRF1
           domain 3
          Length = 435

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 159 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 242
           +GKY  G + TLK L  G  + +I+ +N
Sbjct: 298 TGKYVFGVEDTLKALEMGAVETLIVWEN 325


>At1g12920.1 68414.m01500 eukaryotic release factor 1 family protein
           / eRF1 family protein contains Pfam profiles: PF03463
           eRF1 domain 1, PF03464 eRF1 domain 2, PF03465 eRF1
           domain 3
          Length = 434

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 159 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 242
           +GKY  G + TLK L  G  + +I+ +N
Sbjct: 297 TGKYVFGVEDTLKALEMGAIETLIVWEN 324


>At4g18820.1 68417.m02778 expressed protein
          Length = 1111

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 391 VTRVCDGECAHSVVFSACCS*FNVVPAVVVNTC 293
           +++V D      VVF   CS  +V+P V+++ C
Sbjct: 565 LSKVVDRAAPRHVVFILVCSSLDVLPHVIISRC 597


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,360,458
Number of Sequences: 28952
Number of extensions: 177946
Number of successful extensions: 446
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)