BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30290 (425 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a... 131 5e-32 SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S... 131 5e-32 SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos... 26 2.1 SPBC1711.04 |||methylenetetrahydrofolate reductase |Schizosaccha... 25 3.7 SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun... 25 3.7 SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 25 4.9 SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom... 25 6.5 SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 24 8.6 >SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a|Schizosaccharomyces pombe|chr 1|||Manual Length = 130 Score = 131 bits (316), Expect = 5e-32 Identities = 60/83 (72%), Positives = 71/83 (85%) Frame = +3 Query: 6 NVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVN 185 +VL+D L +I NAE+RG+RQVLIRP SKVIVKFLTVM KHGYI EF +DDHR+GKIV+ Sbjct: 5 SVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGKIVIQ 64 Query: 186 LTGRLNKCGVISPRFDVPINDIE 254 L GR+NKCGVISPRF+V + DIE Sbjct: 65 LNGRINKCGVISPRFNVKLKDIE 87 Score = 63.7 bits (148), Expect = 1e-11 Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%) Frame = +2 Query: 254 RWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 379 +W N LLPSRQ G +VLTTS GIM H EAR K GGKILGFF+ Sbjct: 88 KWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKILGFFY 130 >SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S15a|Schizosaccharomyces pombe|chr 1|||Manual Length = 130 Score = 131 bits (316), Expect = 5e-32 Identities = 60/83 (72%), Positives = 71/83 (85%) Frame = +3 Query: 6 NVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVN 185 +VL+D L +I NAE+RG+RQVLIRP SKVIVKFLTVM KHGYI EF +DDHR+GKIV+ Sbjct: 5 SVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGKIVIQ 64 Query: 186 LTGRLNKCGVISPRFDVPINDIE 254 L GR+NKCGVISPRF+V + DIE Sbjct: 65 LNGRINKCGVISPRFNVKLKDIE 87 Score = 63.7 bits (148), Expect = 1e-11 Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%) Frame = +2 Query: 254 RWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 379 +W N LLPSRQ G +VLTTS GIM H EAR K GGKILGFF+ Sbjct: 88 KWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKILGFFY 130 >SPAC1635.01 |||voltage-dependent anion-selective channel|Schizosaccharomyces pombe|chr 1|||Manual Length = 282 Score = 26.2 bits (55), Expect = 2.1 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = +3 Query: 174 IVVNLTGRLNKCGVISPRFDVPINDIEDGLICS 272 +V N++G + GVIS + + ND +GL S Sbjct: 38 VVFNVSGNQDAKGVISGKLETSFNDKANGLTIS 70 >SPBC1711.04 |||methylenetetrahydrofolate reductase |Schizosaccharomyces pombe|chr 2|||Manual Length = 320 Score = 25.4 bits (53), Expect = 3.7 Identities = 9/21 (42%), Positives = 12/21 (57%) Frame = +3 Query: 207 CGVISPRFDVPINDIEDGLIC 269 CGV S + P N + DG +C Sbjct: 249 CGVPSANYKFPSNLVRDGAVC 269 >SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit Rpc2|Schizosaccharomyces pombe|chr 1|||Manual Length = 1165 Score = 25.4 bits (53), Expect = 3.7 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%) Frame = +3 Query: 192 GRLNKCGVISPRFDVPIND--IEDGLICSPH 278 G+ CGVI + D+P ND I +I +PH Sbjct: 933 GQKGVCGVIVQQEDMPFNDQGICPDIIMNPH 963 >SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces pombe|chr 2|||Manual Length = 1014 Score = 25.0 bits (52), Expect = 4.9 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +2 Query: 284 FGYLVLTTSGGIMDHEEARRKHLGGKIL 367 FGY+V+TT+ + A K LG ++L Sbjct: 798 FGYVVMTTNQDAENALSAAGKQLGNRVL 825 >SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 440 Score = 24.6 bits (51), Expect = 6.5 Identities = 9/23 (39%), Positives = 15/23 (65%) Frame = +3 Query: 273 PHDSLVT*SLQQVVASWTMKKPE 341 P+ S +T SL Q + W +++PE Sbjct: 154 PNQSFLTASLDQKIFHWVIEEPE 176 >SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 1066 Score = 24.2 bits (50), Expect = 8.6 Identities = 13/34 (38%), Positives = 17/34 (50%) Frame = -2 Query: 262 SPSSISLMGTSKRGEMTPHLFSLPVRFTTILPAL 161 S +S+S + TPH F PV + LPAL Sbjct: 169 SVASVSSPNSHNAVPFTPHAFVPPVNNASPLPAL 202 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,585,866 Number of Sequences: 5004 Number of extensions: 29987 Number of successful extensions: 70 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 68 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 70 length of database: 2,362,478 effective HSP length: 66 effective length of database: 2,032,214 effective search space used: 152416050 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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