Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30290
         (425 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...   131   5e-32
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...   131   5e-32
SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos...    26   2.1  
SPBC1711.04 |||methylenetetrahydrofolate reductase |Schizosaccha...    25   3.7  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    25   3.7  
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    25   4.9  
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom...    25   6.5  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    24   8.6  

>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score =  131 bits (316), Expect = 5e-32
 Identities = 60/83 (72%), Positives = 71/83 (85%)
 Frame = +3

Query: 6   NVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVN 185
           +VL+D L +I NAE+RG+RQVLIRP SKVIVKFLTVM KHGYI EF  +DDHR+GKIV+ 
Sbjct: 5   SVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGKIVIQ 64

Query: 186 LTGRLNKCGVISPRFDVPINDIE 254
           L GR+NKCGVISPRF+V + DIE
Sbjct: 65  LNGRINKCGVISPRFNVKLKDIE 87



 Score = 63.7 bits (148), Expect = 1e-11
 Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
 Frame = +2

Query: 254 RWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 379
           +W N LLPSRQ G +VLTTS GIM H EAR K  GGKILGFF+
Sbjct: 88  KWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKILGFFY 130


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score =  131 bits (316), Expect = 5e-32
 Identities = 60/83 (72%), Positives = 71/83 (85%)
 Frame = +3

Query: 6   NVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVN 185
           +VL+D L +I NAE+RG+RQVLIRP SKVIVKFLTVM KHGYI EF  +DDHR+GKIV+ 
Sbjct: 5   SVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSGKIVIQ 64

Query: 186 LTGRLNKCGVISPRFDVPINDIE 254
           L GR+NKCGVISPRF+V + DIE
Sbjct: 65  LNGRINKCGVISPRFNVKLKDIE 87



 Score = 63.7 bits (148), Expect = 1e-11
 Identities = 30/43 (69%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
 Frame = +2

Query: 254 RWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 379
           +W N LLPSRQ G +VLTTS GIM H EAR K  GGKILGFF+
Sbjct: 88  KWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKILGFFY 130


>SPAC1635.01 |||voltage-dependent anion-selective
           channel|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 174 IVVNLTGRLNKCGVISPRFDVPINDIEDGLICS 272
           +V N++G  +  GVIS + +   ND  +GL  S
Sbjct: 38  VVFNVSGNQDAKGVISGKLETSFNDKANGLTIS 70


>SPBC1711.04 |||methylenetetrahydrofolate reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 320

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 207 CGVISPRFDVPINDIEDGLIC 269
           CGV S  +  P N + DG +C
Sbjct: 249 CGVPSANYKFPSNLVRDGAVC 269


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
            Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +3

Query: 192  GRLNKCGVISPRFDVPIND--IEDGLICSPH 278
            G+   CGVI  + D+P ND  I   +I +PH
Sbjct: 933  GQKGVCGVIVQQEDMPFNDQGICPDIIMNPH 963


>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 25.0 bits (52), Expect = 4.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 284 FGYLVLTTSGGIMDHEEARRKHLGGKIL 367
           FGY+V+TT+    +   A  K LG ++L
Sbjct: 798 FGYVVMTTNQDAENALSAAGKQLGNRVL 825


>SPAC890.04c |||ribosome biogenesis protein Ytm1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 24.6 bits (51), Expect = 6.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 273 PHDSLVT*SLQQVVASWTMKKPE 341
           P+ S +T SL Q +  W +++PE
Sbjct: 154 PNQSFLTASLDQKIFHWVIEEPE 176


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 262 SPSSISLMGTSKRGEMTPHLFSLPVRFTTILPAL 161
           S +S+S   +      TPH F  PV   + LPAL
Sbjct: 169 SVASVSSPNSHNAVPFTPHAFVPPVNNASPLPAL 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,585,866
Number of Sequences: 5004
Number of extensions: 29987
Number of successful extensions: 70
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)