Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30290
(425 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823 144 3e-35
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419... 143 6e-35
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289 85 2e-17
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286... 44 4e-05
11_01_0526 - 4140853-4141017,4141416-4141619 27 4.8
04_04_1420 + 33441260-33443704 27 4.8
03_05_0642 - 26346260-26346367,26347902-26348162,26348542-263498... 27 6.3
07_01_0802 - 6287180-6287605 27 8.3
>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
Length = 130
Score = 144 bits (348), Expect = 3e-35
Identities = 66/84 (78%), Positives = 76/84 (90%)
Frame = +3
Query: 3 MNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVV 182
++VL+DALK+++NAEKRGKRQVLIRP SKVI+KFL VM KHGYIGEFE VDDHR+GKIVV
Sbjct: 4 VSVLNDALKTMYNAEKRGKRQVLIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGKIVV 63
Query: 183 NLTGRLNKCGVISPRFDVPINDIE 254
L GRLNKCGVISPRFDV + +IE
Sbjct: 64 ELNGRLNKCGVISPRFDVGVKEIE 87
Score = 77.4 bits (182), Expect = 5e-15
Identities = 34/42 (80%), Positives = 39/42 (92%), Gaps = 1/42 (2%)
Frame = +2
Query: 257 WT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 379
WT LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct: 89 WTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
>02_03_0219 +
16541350-16541482,16541605-16541765,16541863-16541940,
16543176-16543445
Length = 213
Score = 143 bits (346), Expect = 6e-35
Identities = 65/84 (77%), Positives = 76/84 (90%)
Frame = +3
Query: 3 MNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVV 182
++VL+DALK+++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GKIVV
Sbjct: 4 VSVLNDALKTMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGKIVV 63
Query: 183 NLTGRLNKCGVISPRFDVPINDIE 254
L GRLNKCGVISPRFDV + +IE
Sbjct: 64 ELNGRLNKCGVISPRFDVGVKEIE 87
Score = 66.5 bits (155), Expect = 8e-12
Identities = 31/38 (81%), Positives = 34/38 (89%), Gaps = 1/38 (2%)
Frame = +2
Query: 257 WT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKIL 367
WT LLPSRQFGY+VLTTS GIMDHEEARRK++GGK L
Sbjct: 89 WTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKEL 126
>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
Length = 129
Score = 85.0 bits (201), Expect = 2e-17
Identities = 38/82 (46%), Positives = 56/82 (68%)
Frame = +3
Query: 9 VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 188
+L+DAL+++ NAE+RGK L++P S V+V FL +M GYI +FE++D HR GKI V L
Sbjct: 5 ILNDALRTMVNAERRGKATALLQPISGVMVSFLNIMKHRGYIKKFEVIDPHRVGKINVEL 64
Query: 189 TGRLNKCGVISPRFDVPINDIE 254
GR+ C ++ R D+ +IE
Sbjct: 65 HGRIKDCKALTYRQDIRAKEIE 86
Score = 56.4 bits (130), Expect = 9e-09
Identities = 20/37 (54%), Positives = 34/37 (91%)
Frame = +2
Query: 266 LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFF 376
+LP+RQ+GY+V+TT G++DHEEA ++++GG++LG+F
Sbjct: 92 MLPTRQWGYVVITTPNGVLDHEEAIKQNVGGQVLGYF 128
>01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,
2863431-2863516,2863648-2866272
Length = 1139
Score = 44.4 bits (100), Expect = 4e-05
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = +3
Query: 150 VDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIEDG 260
VDDH++G+I++ GRLNK GVIS R DV + + G
Sbjct: 912 VDDHKSGEIILEFDGRLNKWGVISFRSDVKVKKLSPG 948
>11_01_0526 - 4140853-4141017,4141416-4141619
Length = 122
Score = 27.5 bits (58), Expect = 4.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 168 GKIVVNLTGRLNKCGVISPRFDVPINDI 251
G++ + LNKCGVI+P I+D+
Sbjct: 78 GRVHSIIENILNKCGVIAPNLPTKIDDL 105
>04_04_1420 + 33441260-33443704
Length = 814
Score = 27.5 bits (58), Expect = 4.8
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +1
Query: 241 STILKMD*SAP-LTTVWLPSPYNKWW 315
S IL + P +++ + PSP+NKWW
Sbjct: 190 SNILNLMYDGPEISSNYWPSPFNKWW 215
>03_05_0642 - 26346260-26346367,26347902-26348162,26348542-26349849,
26349960-26350178,26350241-26350300,26352159-26352215,
26352945-26353029,26353486-26353843,26353931-26355170
Length = 1231
Score = 27.1 bits (57), Expect = 6.3
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +3
Query: 156 DHRAGKIVVNLTGRLNKCGVISPRFDVPINDIEDGLICSPH 278
D+ G + +LN +S + ++++EDG +CS H
Sbjct: 1013 DYMNGNDTGGTSSKLNDRAEVSRKDKASVSELEDGNVCSHH 1053
>07_01_0802 - 6287180-6287605
Length = 141
Score = 26.6 bits (56), Expect = 8.3
Identities = 8/18 (44%), Positives = 9/18 (50%)
Frame = +2
Query: 161 QSWQDCCKSHRQTKQVWC 214
Q WQDCC+ WC
Sbjct: 51 QVWQDCCRQLAAVDDGWC 68
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,112,467
Number of Sequences: 37544
Number of extensions: 194866
Number of successful extensions: 368
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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