BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30290 (425 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823 144 3e-35 02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419... 143 6e-35 02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289 85 2e-17 01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286... 44 4e-05 11_01_0526 - 4140853-4141017,4141416-4141619 27 4.8 04_04_1420 + 33441260-33443704 27 4.8 03_05_0642 - 26346260-26346367,26347902-26348162,26348542-263498... 27 6.3 07_01_0802 - 6287180-6287605 27 8.3 >07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823 Length = 130 Score = 144 bits (348), Expect = 3e-35 Identities = 66/84 (78%), Positives = 76/84 (90%) Frame = +3 Query: 3 MNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVV 182 ++VL+DALK+++NAEKRGKRQVLIRP SKVI+KFL VM KHGYIGEFE VDDHR+GKIVV Sbjct: 4 VSVLNDALKTMYNAEKRGKRQVLIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGKIVV 63 Query: 183 NLTGRLNKCGVISPRFDVPINDIE 254 L GRLNKCGVISPRFDV + +IE Sbjct: 64 ELNGRLNKCGVISPRFDVGVKEIE 87 Score = 77.4 bits (182), Expect = 5e-15 Identities = 34/42 (80%), Positives = 39/42 (92%), Gaps = 1/42 (2%) Frame = +2 Query: 257 WT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 379 WT LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LGFF+ Sbjct: 89 WTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130 >02_03_0219 + 16541350-16541482,16541605-16541765,16541863-16541940, 16543176-16543445 Length = 213 Score = 143 bits (346), Expect = 6e-35 Identities = 65/84 (77%), Positives = 76/84 (90%) Frame = +3 Query: 3 MNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVV 182 ++VL+DALK+++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GKIVV Sbjct: 4 VSVLNDALKTMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSGKIVV 63 Query: 183 NLTGRLNKCGVISPRFDVPINDIE 254 L GRLNKCGVISPRFDV + +IE Sbjct: 64 ELNGRLNKCGVISPRFDVGVKEIE 87 Score = 66.5 bits (155), Expect = 8e-12 Identities = 31/38 (81%), Positives = 34/38 (89%), Gaps = 1/38 (2%) Frame = +2 Query: 257 WT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKIL 367 WT LLPSRQFGY+VLTTS GIMDHEEARRK++GGK L Sbjct: 89 WTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKEL 126 >02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289 Length = 129 Score = 85.0 bits (201), Expect = 2e-17 Identities = 38/82 (46%), Positives = 56/82 (68%) Frame = +3 Query: 9 VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 188 +L+DAL+++ NAE+RGK L++P S V+V FL +M GYI +FE++D HR GKI V L Sbjct: 5 ILNDALRTMVNAERRGKATALLQPISGVMVSFLNIMKHRGYIKKFEVIDPHRVGKINVEL 64 Query: 189 TGRLNKCGVISPRFDVPINDIE 254 GR+ C ++ R D+ +IE Sbjct: 65 HGRIKDCKALTYRQDIRAKEIE 86 Score = 56.4 bits (130), Expect = 9e-09 Identities = 20/37 (54%), Positives = 34/37 (91%) Frame = +2 Query: 266 LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFF 376 +LP+RQ+GY+V+TT G++DHEEA ++++GG++LG+F Sbjct: 92 MLPTRQWGYVVITTPNGVLDHEEAIKQNVGGQVLGYF 128 >01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391, 2863431-2863516,2863648-2866272 Length = 1139 Score = 44.4 bits (100), Expect = 4e-05 Identities = 19/37 (51%), Positives = 26/37 (70%) Frame = +3 Query: 150 VDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIEDG 260 VDDH++G+I++ GRLNK GVIS R DV + + G Sbjct: 912 VDDHKSGEIILEFDGRLNKWGVISFRSDVKVKKLSPG 948 >11_01_0526 - 4140853-4141017,4141416-4141619 Length = 122 Score = 27.5 bits (58), Expect = 4.8 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +3 Query: 168 GKIVVNLTGRLNKCGVISPRFDVPINDI 251 G++ + LNKCGVI+P I+D+ Sbjct: 78 GRVHSIIENILNKCGVIAPNLPTKIDDL 105 >04_04_1420 + 33441260-33443704 Length = 814 Score = 27.5 bits (58), Expect = 4.8 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%) Frame = +1 Query: 241 STILKMD*SAP-LTTVWLPSPYNKWW 315 S IL + P +++ + PSP+NKWW Sbjct: 190 SNILNLMYDGPEISSNYWPSPFNKWW 215 >03_05_0642 - 26346260-26346367,26347902-26348162,26348542-26349849, 26349960-26350178,26350241-26350300,26352159-26352215, 26352945-26353029,26353486-26353843,26353931-26355170 Length = 1231 Score = 27.1 bits (57), Expect = 6.3 Identities = 11/41 (26%), Positives = 21/41 (51%) Frame = +3 Query: 156 DHRAGKIVVNLTGRLNKCGVISPRFDVPINDIEDGLICSPH 278 D+ G + +LN +S + ++++EDG +CS H Sbjct: 1013 DYMNGNDTGGTSSKLNDRAEVSRKDKASVSELEDGNVCSHH 1053 >07_01_0802 - 6287180-6287605 Length = 141 Score = 26.6 bits (56), Expect = 8.3 Identities = 8/18 (44%), Positives = 9/18 (50%) Frame = +2 Query: 161 QSWQDCCKSHRQTKQVWC 214 Q WQDCC+ WC Sbjct: 51 QVWQDCCRQLAAVDDGWC 68 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,112,467 Number of Sequences: 37544 Number of extensions: 194866 Number of successful extensions: 368 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 362 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 368 length of database: 14,793,348 effective HSP length: 75 effective length of database: 11,977,548 effective search space used: 790518168 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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