Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30290
         (425 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35685| Best HMM Match : Ribosomal_S8 (HMM E-Value=0.08)             72   2e-13
SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.13 
SB_54474| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_19803| Best HMM Match : Baculo_11_kDa (HMM E-Value=9.4)             27   8.6  

>SB_35685| Best HMM Match : Ribosomal_S8 (HMM E-Value=0.08)
          Length = 120

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 44/76 (57%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
 Frame = +3

Query: 3   MNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVV 182
           +NVL+DAL SI NAEKRGKRQV IRP SKVIVKFLTVMMKH        V   R G++V 
Sbjct: 4   VNVLNDALVSICNAEKRGKRQVQIRPSSKVIVKFLTVMMKH--------VAQPRIGEMVT 55

Query: 183 N-LTGRLNKCGVISPR 227
              +G L+  GV+  R
Sbjct: 56  RPCSGALSAAGVVVTR 71


>SB_23248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 29

 Score = 32.7 bits (71), Expect = 0.13
 Identities = 13/16 (81%), Positives = 14/16 (87%)
 Frame = +3

Query: 207 CGVISPRFDVPINDIE 254
           CGVISPRFDV + DIE
Sbjct: 1   CGVISPRFDVGVRDIE 16


>SB_54474| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 60

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +3

Query: 27  KSIHNAEKRGKRQVLIRPCSKVIVKFL--TVMMKHGYIGEFEIV 152
           K+IHN   RGKR  +++    V   F   TV+M++G    F++V
Sbjct: 17  KNIHNVNVRGKRGNIVQVYPAVEYDFTPNTVLMRNGDYVHFQLV 60


>SB_19803| Best HMM Match : Baculo_11_kDa (HMM E-Value=9.4)
          Length = 177

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = -3

Query: 288 PNCREGSRLVHLQYR*WEHQNEVK*HH 208
           PNC E + L H Q   W HQ+    HH
Sbjct: 67  PNCLEMTHLYHDQQHQWNHQHH---HH 90


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,594,668
Number of Sequences: 59808
Number of extensions: 229913
Number of successful extensions: 1023
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1007
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)