Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30290
(425 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF025460-6|AAB70989.1| 130|Caenorhabditis elegans Ribosomal pro... 149 6e-37
U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical pr... 29 1.1
U41547-3|AAA83193.2| 145|Caenorhabditis elegans Hypothetical pr... 28 3.2
Z81066-3|CAI46608.1| 363|Caenorhabditis elegans Hypothetical pr... 27 4.3
AL032632-14|CAO82067.1| 504|Caenorhabditis elegans Hypothetical... 27 7.4
AL032632-13|CAA21587.2| 507|Caenorhabditis elegans Hypothetical... 27 7.4
U40939-3|ABD63235.1| 960|Caenorhabditis elegans Hunchback like ... 26 9.8
U40939-2|AAA81701.3| 982|Caenorhabditis elegans Hunchback like ... 26 9.8
AF097737-1|AAD16170.1| 982|Caenorhabditis elegans hunchback-rel... 26 9.8
AF039710-6|AAB96688.1| 392|Caenorhabditis elegans Hypothetical ... 26 9.8
>AF025460-6|AAB70989.1| 130|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 22 protein.
Length = 130
Score = 149 bits (362), Expect = 6e-37
Identities = 70/84 (83%), Positives = 78/84 (92%)
Frame = +3
Query: 3 MNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVV 182
MNVL+DAL +I+NAEKRGKRQVLIRP SKVIV+FLTVMMKHGYIGEFEIVDDHRAGKIVV
Sbjct: 4 MNVLADALNAINNAEKRGKRQVLIRPASKVIVRFLTVMMKHGYIGEFEIVDDHRAGKIVV 63
Query: 183 NLTGRLNKCGVISPRFDVPINDIE 254
NLTGRLNK VISPR ++ +ND+E
Sbjct: 64 NLTGRLNKASVISPRLNIRLNDLE 87
Score = 83.0 bits (196), Expect = 8e-17
Identities = 38/43 (88%), Positives = 41/43 (95%), Gaps = 1/43 (2%)
Frame = +2
Query: 254 RWTN-LLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 379
++TN LLPSRQFGYL+LTTS GIMDHEEARRKHLGGKILGFFF
Sbjct: 88 KYTNTLLPSRQFGYLILTTSAGIMDHEEARRKHLGGKILGFFF 130
>U00032-8|AAA50632.2| 1163|Caenorhabditis elegans Hypothetical protein
F37A4.4 protein.
Length = 1163
Score = 29.5 bits (63), Expect = 1.1
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = +3
Query: 6 NVLSDALKSIH--NAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIV 179
NVL D+++ I+ N K KR I C+K L V + GY EI+ H A +
Sbjct: 826 NVLIDSVREINATNLLKAVKRGAYINVCNKYGNTALHVATRRGYQNLVEILIKHGADRSF 885
Query: 180 VN 185
+N
Sbjct: 886 LN 887
>U41547-3|AAA83193.2| 145|Caenorhabditis elegans Hypothetical
protein F22A3.2 protein.
Length = 145
Score = 27.9 bits (59), Expect = 3.2
Identities = 14/49 (28%), Positives = 28/49 (57%)
Frame = -1
Query: 209 TLV*SACEIYNNLASSVIINDFKLSDVTVLHHHC*KLNDDFGTGPDEDL 63
++V +A E ++ + + F+ +V V + ++DDFG+ PD+DL
Sbjct: 14 SVVLAASESHSGRQNYRVKGAFRCGNVPVKNVQVKLIDDDFGSDPDDDL 62
>Z81066-3|CAI46608.1| 363|Caenorhabditis elegans Hypothetical
protein F17B5.6 protein.
Length = 363
Score = 27.5 bits (58), Expect = 4.3
Identities = 9/14 (64%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
Frame = +1
Query: 277 TTVWL-PSPYNKWW 315
T +WL P PYN WW
Sbjct: 29 TVIWLIPRPYNYWW 42
>AL032632-14|CAO82067.1| 504|Caenorhabditis elegans Hypothetical
protein Y11D7A.12b protein.
Length = 504
Score = 26.6 bits (56), Expect = 7.4
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 352 KVFSSGFFMVHDATTCCK 299
KVFS+GFFM D + C+
Sbjct: 140 KVFSNGFFMTFDKLSSCQ 157
>AL032632-13|CAA21587.2| 507|Caenorhabditis elegans Hypothetical
protein Y11D7A.12a protein.
Length = 507
Score = 26.6 bits (56), Expect = 7.4
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -2
Query: 352 KVFSSGFFMVHDATTCCK 299
KVFS+GFFM D + C+
Sbjct: 140 KVFSNGFFMTFDKLSSCQ 157
>U40939-3|ABD63235.1| 960|Caenorhabditis elegans Hunchback like
(fly gap gene related)protein 1, isoform b protein.
Length = 960
Score = 26.2 bits (55), Expect = 9.8
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Frame = -2
Query: 319 DATTCCKD*VT-KLS*GEQISPSSISLMGTSKRGEMTPHLFSLPVRFTTILPA-L*SSTI 146
D+T +D T KL G P S S+ GTS ++T +P ++P+ L +S
Sbjct: 132 DSTIKPEDQATPKLEEGSDSKPESTSVEGTSSNYQVTSEPVQMPQMPIPVIPSFLKNSLP 191
Query: 145 SNSPM*PCFIITV-KNLTMTLEQGLMRTCLFPRFS 44
+ P+ P V ++ + ++E+ L+ T +F+
Sbjct: 192 APIPITPTQSANVERSNSPSIEEALLLTLSQQQFA 226
>U40939-2|AAA81701.3| 982|Caenorhabditis elegans Hunchback like
(fly gap gene related)protein 1, isoform a protein.
Length = 982
Score = 26.2 bits (55), Expect = 9.8
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Frame = -2
Query: 319 DATTCCKD*VT-KLS*GEQISPSSISLMGTSKRGEMTPHLFSLPVRFTTILPA-L*SSTI 146
D+T +D T KL G P S S+ GTS ++T +P ++P+ L +S
Sbjct: 154 DSTIKPEDQATPKLEEGSDSKPESTSVEGTSSNYQVTSEPVQMPQMPIPVIPSFLKNSLP 213
Query: 145 SNSPM*PCFIITV-KNLTMTLEQGLMRTCLFPRFS 44
+ P+ P V ++ + ++E+ L+ T +F+
Sbjct: 214 APIPITPTQSANVERSNSPSIEEALLLTLSQQQFA 248
>AF097737-1|AAD16170.1| 982|Caenorhabditis elegans
hunchback-related protein protein.
Length = 982
Score = 26.2 bits (55), Expect = 9.8
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Frame = -2
Query: 319 DATTCCKD*VT-KLS*GEQISPSSISLMGTSKRGEMTPHLFSLPVRFTTILPA-L*SSTI 146
D+T +D T KL G P S S+ GTS ++T +P ++P+ L +S
Sbjct: 154 DSTIKPEDQATPKLEEGSDSKPESTSVEGTSSNYQVTSEPVQMPQMPIPVIPSFLKNSLP 213
Query: 145 SNSPM*PCFIITV-KNLTMTLEQGLMRTCLFPRFS 44
+ P+ P V ++ + ++E+ L+ T +F+
Sbjct: 214 APIPITPTQSANVERSNSPSIEEALLLTLSQQQFA 248
>AF039710-6|AAB96688.1| 392|Caenorhabditis elegans Hypothetical
protein C46E10.3 protein.
Length = 392
Score = 26.2 bits (55), Expect = 9.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 226 RGEMTPHLFSLPVRFTTILPAL*SSTISNSPM 131
+G+ + LP RF+T+L AL T+ NS M
Sbjct: 321 KGDCPQDSYDLP-RFSTVLKALYGCTVGNSDM 351
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,752,001
Number of Sequences: 27780
Number of extensions: 169942
Number of successful extensions: 360
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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