Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30290
         (425 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF) cy...   144   3e-35
At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA) id...   144   3e-35
At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA) id...   144   3e-35
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy...   142   9e-35
At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC)         134   2e-32
At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB)          85   2e-17
At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE) ri...    84   4e-17
At1g18390.1 68414.m02297 protein kinase family protein contains ...    29   1.3  
At3g02760.1 68416.m00268 histidyl-tRNA synthetase, putative / hi...    28   3.0  
At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-conta...    27   7.0  
At4g13600.1 68417.m02117 glycosyl hydrolase family protein 17 si...    26   9.3  
At3g53290.1 68416.m05876 cytochrome P450, putative Similar to Cy...    26   9.3  

>At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF)
           cytoplasmic ribosomal protein S15a, Arabidopsis
           thaliana, EMBL:ATAF1412
          Length = 130

 Score =  144 bits (348), Expect = 3e-35
 Identities = 66/84 (78%), Positives = 76/84 (90%)
 Frame = +3

Query: 3   MNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVV 182
           ++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GKIVV
Sbjct: 4   ISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVV 63

Query: 183 NLTGRLNKCGVISPRFDVPINDIE 254
            L GRLNKCGVISPRFDV + +IE
Sbjct: 64  ELNGRLNKCGVISPRFDVGVKEIE 87



 Score = 77.4 bits (182), Expect = 4e-15
 Identities = 34/42 (80%), Positives = 39/42 (92%), Gaps = 1/42 (2%)
 Frame = +2

Query: 257 WT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 379
           WT  LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct: 89  WTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130


>At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA)
           identical to GB:AAA61608 from [Arabidopsis thaliana]
           (Plant Physiol. 106 (1), 401-402 (1994))
          Length = 130

 Score =  144 bits (348), Expect = 3e-35
 Identities = 66/84 (78%), Positives = 76/84 (90%)
 Frame = +3

Query: 3   MNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVV 182
           ++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GKIVV
Sbjct: 4   ISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVV 63

Query: 183 NLTGRLNKCGVISPRFDVPINDIE 254
            L GRLNKCGVISPRFDV + +IE
Sbjct: 64  ELNGRLNKCGVISPRFDVGVKEIE 87



 Score = 77.4 bits (182), Expect = 4e-15
 Identities = 34/42 (80%), Positives = 39/42 (92%), Gaps = 1/42 (2%)
 Frame = +2

Query: 257 WT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 379
           WT  LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct: 89  WTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130


>At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA)
           identical to GB:AAA61608 from [Arabidopsis thaliana]
           (Plant Physiol. 106 (1), 401-402 (1994))
          Length = 130

 Score =  144 bits (348), Expect = 3e-35
 Identities = 66/84 (78%), Positives = 76/84 (90%)
 Frame = +3

Query: 3   MNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVV 182
           ++VL+DALKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GKIVV
Sbjct: 4   ISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVV 63

Query: 183 NLTGRLNKCGVISPRFDVPINDIE 254
            L GRLNKCGVISPRFDV + +IE
Sbjct: 64  ELNGRLNKCGVISPRFDVGVKEIE 87



 Score = 77.4 bits (182), Expect = 4e-15
 Identities = 34/42 (80%), Positives = 39/42 (92%), Gaps = 1/42 (2%)
 Frame = +2

Query: 257 WT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 379
           WT  LLPSRQFGY+VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct: 89  WTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130


>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
           cytoplasmic ribosomal protein S15a, Arabidopsis
           thaliana, EMBL:ATAF1412
          Length = 130

 Score =  142 bits (344), Expect = 9e-35
 Identities = 65/84 (77%), Positives = 75/84 (89%)
 Frame = +3

Query: 3   MNVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVV 182
           ++VL+D LKS++NAEKRGKRQV+IRP SKVI+KFL VM KHGYIGEFE VDDHR+GKIVV
Sbjct: 4   ISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVV 63

Query: 183 NLTGRLNKCGVISPRFDVPINDIE 254
            L GRLNKCGVISPRFDV + +IE
Sbjct: 64  ELNGRLNKCGVISPRFDVGVKEIE 87



 Score = 75.8 bits (178), Expect = 1e-14
 Identities = 33/42 (78%), Positives = 39/42 (92%), Gaps = 1/42 (2%)
 Frame = +2

Query: 257 WT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 379
           WT  LLPSRQFG++VLTTS GIMDHEEARRK++GGK+LGFF+
Sbjct: 89  WTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130


>At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC) 
          Length = 136

 Score =  134 bits (325), Expect = 2e-32
 Identities = 61/83 (73%), Positives = 72/83 (86%)
 Frame = +3

Query: 6   NVLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVN 185
           +VL+D LKS+ NAEK+GKRQV+IRP SKVI+KFLTVM KHGYI EFE VDDHR+GKIVV 
Sbjct: 11  SVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGKIVVE 70

Query: 186 LTGRLNKCGVISPRFDVPINDIE 254
           L GRLN CGVISPR+D+ + +IE
Sbjct: 71  LNGRLNNCGVISPRYDLGVKEIE 93



 Score = 76.2 bits (179), Expect = 9e-15
 Identities = 33/42 (78%), Positives = 39/42 (92%), Gaps = 1/42 (2%)
 Frame = +2

Query: 257 WT-NLLPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 379
           WT  LLPSRQFGY+VLTTS GIMDHEEAR+K++GGK+LGFF+
Sbjct: 95  WTAKLLPSRQFGYIVLTTSAGIMDHEEARKKNVGGKVLGFFY 136


>At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB) 
          Length = 129

 Score = 85.0 bits (201), Expect = 2e-17
 Identities = 39/81 (48%), Positives = 56/81 (69%)
 Frame = +3

Query: 9   VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 188
           +L+DAL++I NAEKRGK  V ++P S V+  FL +M + GYI  F++ D HR G+I V+L
Sbjct: 5   ILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRITVDL 64

Query: 189 TGRLNKCGVISPRFDVPINDI 251
            GR+N C  ++ R DV  N+I
Sbjct: 65  QGRVNDCKALTYRQDVKANEI 85



 Score = 57.6 bits (133), Expect = 3e-09
 Identities = 22/36 (61%), Positives = 33/36 (91%)
 Frame = +2

Query: 269 LPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFF 376
           LP+RQ+GY+V+TT  GI+DHEEA ++++GG++LGFF
Sbjct: 93  LPTRQWGYIVITTPDGILDHEEAIKRNVGGQVLGFF 128


>At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE)
           ribosomal protein S15a - Brassica napus,PIR2:S20945
          Length = 129

 Score = 83.8 bits (198), Expect = 4e-17
 Identities = 38/82 (46%), Positives = 56/82 (68%)
 Frame = +3

Query: 9   VLSDALKSIHNAEKRGKRQVLIRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNL 188
           +L+DAL++I NAE+RGK  V ++P S V+  FL +M + GYI  F++ D HR G+I V+L
Sbjct: 5   ILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDL 64

Query: 189 TGRLNKCGVISPRFDVPINDIE 254
            GR+N C  ++ R DV   +IE
Sbjct: 65  QGRVNDCKALTYRQDVRAKEIE 86



 Score = 58.4 bits (135), Expect = 2e-09
 Identities = 22/37 (59%), Positives = 34/37 (91%)
 Frame = +2

Query: 269 LPSRQFGYLVLTTSGGIMDHEEARRKHLGGKILGFFF 379
           LP+RQ+GY+V+TT  GI+DHEEA ++++GG++LGFF+
Sbjct: 93  LPTRQWGYVVITTPDGILDHEEAIKRNVGGQVLGFFY 129


>At1g18390.1 68414.m02297 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 605

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +3

Query: 72  IRPCSKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIV 179
           +RPC   +   LT +  +G+  E ++VD +++G +V
Sbjct: 556 LRPCMSHVQDTLTRIQNNGFGSEMDVVDVNKSGPLV 591


>At3g02760.1 68416.m00268 histidyl-tRNA synthetase, putative /
           histidine--tRNA ligase, putative similar to SP|P12081
           Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA
           ligase) (HisRS) {Homo sapiens}; contains Pfam profiles
           PF00587: tRNA synthetase class II core domain (G, H, P,
           S and T), PF03129: Anticodon binding domain
          Length = 479

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 19/54 (35%), Positives = 29/54 (53%)
 Frame = +3

Query: 93  IVKFLTVMMKHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIE 254
           IVK LT ++    IG++E+  +HR  K+   L G L  CGV   +F    + I+
Sbjct: 175 IVKILTELLDELEIGDYEVKLNHR--KL---LDGMLEICGVPPEKFRTICSSID 223


>At2g26890.1 68415.m03226 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226:
           DnaJ domain
          Length = 2554

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = +3

Query: 120 KHGYIGEFEIVDDHRAGKIVVNLTGRLNKCGVISPRFDVPINDIEDGLICSPH 278
           KH  I   + V   + G + + L  RL    V SP F + I ++ + ++C PH
Sbjct: 575 KHATIMHTKSVLFAQQGYVTI-LVNRLKPMSV-SPLFSMAIVEVFEAMVCDPH 625


>At4g13600.1 68417.m02117 glycosyl hydrolase family protein 17
           similar to elicitor inducible chitinase Nt-SubE76
           GI:11071974 from [Nicotiana tabacum]
          Length = 183

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -2

Query: 265 ISPSSISLMGTSKRGEMTPHLFSLPVRFTTILPAL*SSTISNSPM 131
           ++P S +  GTS   +  P + +     TT +    S+T+ NSPM
Sbjct: 81  MAPGSCNFAGTSTIAKTDPSINAGGSASTTTVGGTPSTTVGNSPM 125


>At3g53290.1 68416.m05876 cytochrome P450, putative Similar to
           Cytochrome P450 71B31 (SP:Q9SCN2)[Arabidopsis thaliana];
           conatins Pfam profile: PF00067 cytochrome P450
          Length = 407

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = +3

Query: 84  SKVIVKFLTVMMKHGYIGEFEIVDDHRAGKIVVN----LTGRLNKCGVISPRFDVPINDI 251
           S +I   L ++ K   IG F+I  DH  G + V+    LTG L +  + S +  +   D+
Sbjct: 195 SNLISAMLNMINKPTNIGSFKITSDHLKGVMSVSVYDFLTGTLIRATLGSNKERITEEDL 254

Query: 252 E 254
           E
Sbjct: 255 E 255


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,275,239
Number of Sequences: 28952
Number of extensions: 160377
Number of successful extensions: 279
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)