Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30289
(713 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0039 - 19118632-19118820,19119018-19119395,19120151-191203... 31 0.69
12_02_1164 + 26620779-26621087 31 1.2
10_08_0295 - 16581014-16583071 31 1.2
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647... 30 2.1
09_03_0180 - 13141083-13141808 29 2.8
06_01_0835 - 6315762-6316844 29 2.8
05_04_0309 - 20100231-20100307,20100362-20100503,20100588-201009... 29 2.8
03_03_0171 - 15068230-15068247,15068330-15068788 29 2.8
05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663 29 3.7
01_05_0769 - 25042022-25042447,25042856-25043234,25043714-250437... 29 4.8
12_02_0988 - 25064023-25064327,25064425-25064575,25064995-250652... 28 6.4
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201... 28 6.4
12_01_0237 + 1782593-1782778,1784942-1784996,1785086-1787028,178... 28 8.5
11_01_0240 + 1852186-1852371,1854183-1854237,1854391-1856267,185... 28 8.5
10_07_0138 + 13325418-13325954 28 8.5
06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176 28 8.5
>02_04_0039 - 19118632-19118820,19119018-19119395,19120151-19120345,
19120425-19120502,19120567-19120752,19120828-19121058,
19121137-19121490,19121588-19121785,19121869-19122039,
19122156-19122263,19122362-19122580,19122665-19122871,
19122978-19123196,19123315-19123389,19123749-19123901
Length = 986
Score = 31.5 bits (68), Expect = 0.69
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Frame = +3
Query: 36 LIKDGLVLVEQVR--DSR-LATLMAEYRAAQEHAKSSRLNLWRHGDITEDD 179
++++GL +E+ + D+R + QE AK RL +W++GD+ D+
Sbjct: 922 MLEEGLARLERSKRWDTRERKAALQNLEQFQEKAKKERLQIWQYGDVESDE 972
>12_02_1164 + 26620779-26621087
Length = 102
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -1
Query: 299 RGRCCRHLQWCRWHSADVRGRCGGVNAGGVQLATHPEFH 183
RG R W R+ S RGRCG + GG + H E H
Sbjct: 4 RGGSPRRCPWHRYASGP-RGRCGEEDQGGDVVGRHEEVH 41
>10_08_0295 - 16581014-16583071
Length = 685
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 127 PRARDSTCGGTVTSPRTMQWNSGCVASCTPP 219
P + S GG + + RT QW GC PP
Sbjct: 247 PSSDSSDSGGPIPTVRTFQWYLGCADGTQPP 277
>01_01_0829 +
6471032-6471870,6472490-6472685,6472772-6472956,
6473206-6473539,6473629-6473833,6474927-6475033,
6475117-6475269
Length = 672
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/46 (34%), Positives = 20/46 (43%)
Frame = +1
Query: 121 STPRARDSTCGGTVTSPRTMQWNSGCVASCTPPALTPPHRPRTSAL 258
++P G S R + S C A+ TPPA TPP R L
Sbjct: 117 TSPLTNALPAGNICPSGRLAKPLSSCSAAATPPAPTPPRAARHDVL 162
>09_03_0180 - 13141083-13141808
Length = 241
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Frame = +3
Query: 69 VRDSRLATLMAEYRAAQEHAKSSRLNLWRHG-DITEDDAVEF-GVRR*LYAPGVDATTS 239
VRD A + Y + +S +N+W +G E++A EF G+ R Y+ VD +TS
Sbjct: 183 VRDGEAAFVPKSYSPSSIKKITSSMNIWSYGIGRQEEEAREFWGLERVDYSIWVDFSTS 241
>06_01_0835 - 6315762-6316844
Length = 360
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 139 DSTCGGTVTSPRTMQWNSGCVASCTPPALTPPHRPRTSAL 258
DS G T+ T + + +++C+PP L PP P +AL
Sbjct: 286 DSPKGSASTTTTTSEGDESAISACSPP-LPPPPPPPPAAL 324
>05_04_0309 -
20100231-20100307,20100362-20100503,20100588-20100967,
20101049-20101076,20101182-20101306,20101402-20101457,
20101709-20101791,20101881-20101949,20102050-20102640
Length = 516
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +1
Query: 130 RARDSTCGGTVTSPRTMQWNSGCVASCTPPALTPPHRPRTS 252
R RD C T+PR + GC ++ TP TP + S
Sbjct: 42 RRRDRICEILFTAPRAPPCHHGCGSAATPTPATPVEEDKGS 82
>03_03_0171 - 15068230-15068247,15068330-15068788
Length = 158
Score = 29.5 bits (63), Expect = 2.8
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Frame = -1
Query: 245 RGRCGGVNAGG---VQLATHPEFHCIVLGDVTVPPQVESRALGVLLSGAILGH 96
R RC GV++ G V++ H + HC V PP + G + S + H
Sbjct: 16 RDRCVGVSSNGLRYVKVRAHRQQHCPSKSPVAPPPLCDDCRAGPVTSSVLYDH 68
>05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663
Length = 741
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 127 PRARDSTCGGTVTSPRTMQWNSGCVASCTPP 219
P + S GG + + RT QW GC PP
Sbjct: 557 PSSDLSDSGGPIPTVRTFQWYLGCADGTQPP 587
>01_05_0769 -
25042022-25042447,25042856-25043234,25043714-25043763,
25044222-25044442,25045085-25045385
Length = 458
Score = 28.7 bits (61), Expect = 4.8
Identities = 25/86 (29%), Positives = 36/86 (41%)
Frame = -3
Query: 318 SIW*RMAWTMLSTSTVVQVAQCGCAWAMWWRQRRGRTASDAPRIPLHRPR*CHRAATS*V 139
S W A + + ++ +A WA WW RR A A I +R +R T V
Sbjct: 9 SQWILAAAAAAAVAALLWLAVSTLEWA-WWTPRRLERALRAQGIRGNR----YRLFTGDV 63
Query: 138 ASSWRAPERRDTRPSMSPVGCHEPAP 61
+ R R+ R P+GCH+ P
Sbjct: 64 PENVRL--NREARKKPLPLGCHDIIP 87
>12_02_0988 -
25064023-25064327,25064425-25064575,25064995-25065259,
25065640-25065836
Length = 305
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 138 ASSWRAPERRDTRPSMSPVGCHEPAP 61
A+S P R RPS+ P GC AP
Sbjct: 23 AASSPPPRSRGRRPSLPPAGCFHAAP 48
>01_07_0254 +
42318181-42319471,42319581-42319792,42319909-42320132,
42320232-42321009
Length = 834
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -2
Query: 193 PNSTASSSVMSPCRHKLSRELLACS*AARYSAINVAS 83
P S +SSS +SP H LS E L AA+++ AS
Sbjct: 116 PPSPSSSSTVSPLSHTLSDEDLDAHGAAKHATAAAAS 152
>12_01_0237 +
1782593-1782778,1784942-1784996,1785086-1787028,
1787103-1787261,1787432-1787603,1787705-1788003,
1788278-1788583
Length = 1039
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 334 SVYSSQYMVKNGVDDAVDIYSGAGGTVRMCVGD 236
+++ + V+ GV DAV AG TVRM GD
Sbjct: 653 AIFGIKDPVRPGVKDAVKTCMSAGITVRMVTGD 685
>11_01_0240 +
1852186-1852371,1854183-1854237,1854391-1856267,
1856342-1856500,1856692-1856863,1856965-1857263,
1857539-1857844
Length = 1017
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -2
Query: 334 SVYSSQYMVKNGVDDAVDIYSGAGGTVRMCVGD 236
+++ + V+ GV DAV AG TVRM GD
Sbjct: 631 AIFGIKDPVRPGVKDAVKTCMSAGITVRMVTGD 663
>10_07_0138 + 13325418-13325954
Length = 178
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = -1
Query: 308 KEWRGRCCRHLQWCR-WHSADVRGRCGGVNAGG 213
+ WR R C +W R W S D G GG GG
Sbjct: 107 RSWRRRRCSR-RWRRLWTSGDAHGGDGGRGGGG 138
>06_01_1132 + 9346372-9346429,9347314-9348179,9348817-9349176
Length = 427
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 379 EQLFINQKFIIANYDTCVVPEDITMVSSEHGSGRG 483
+Q + ++F CVVP ITM+S + SG G
Sbjct: 250 QQQEMQKEFAEKEGSECVVPSQITMLSEQQHSGYG 284
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,500,588
Number of Sequences: 37544
Number of extensions: 393893
Number of successful extensions: 1366
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1366
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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