Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30289
         (713 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23596| Best HMM Match : No HMM Matches (HMM E-Value=.)              69   5e-12
SB_38755| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.23 
SB_11317| Best HMM Match : Trypsin (HMM E-Value=3e-08)                 31   1.2  
SB_36311| Best HMM Match : Pox_A32 (HMM E-Value=0.16)                  30   2.1  
SB_5854| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.3e-17)            30   2.1  
SB_21575| Best HMM Match : Trypsin (HMM E-Value=0)                     29   2.8  

>SB_23596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 830

 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 29/51 (56%), Positives = 41/51 (80%)
 Frame = +3

Query: 30  QNLIKDGLVLVEQVRDSRLATLMAEYRAAQEHAKSSRLNLWRHGDITEDDA 182
           ++L+ DG VLVE+ ++ RL  +M EYR AQ+ A+++RLNLWR+GD TEDDA
Sbjct: 661 KSLVADGFVLVEKRKEKRLQKMMEEYRKAQDTARTTRLNLWRYGDFTEDDA 711


>SB_38755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 471

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = -3

Query: 456 HHRNVLRHNTRIVISNNKLLINKQL 382
           HH+N++ +N  I+I+NN ++IN  +
Sbjct: 387 HHQNIIINNNNIIINNNNIIINNNI 411



 Score = 27.9 bits (59), Expect = 8.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -3

Query: 456 HHRNVLRHNTRIVISNNKLLIN 391
           HH+    H+  I+I+NN ++IN
Sbjct: 380 HHQQQQHHHQNIIINNNNIIIN 401


>SB_11317| Best HMM Match : Trypsin (HMM E-Value=3e-08)
          Length = 153

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +1

Query: 76  TADWRH*WPSIAPLRSTPRARDSTCGGTVTSPRTMQWNSGCVASCTPPAL 225
           TA  ++ WP  A LRS   +    CGGT+  PR +   S C+   TP +L
Sbjct: 28  TAAPKNAWPWQAQLRSA--SGFPFCGGTLVHPRFVVTASHCIDKKTPSSL 75


>SB_36311| Best HMM Match : Pox_A32 (HMM E-Value=0.16)
          Length = 869

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -2

Query: 262 GTVRMCVGDVVASTPGAYS*RRTPNSTASSSVMSPCRHKLS 140
           G++ +C G ++A   GA    R  N+  ++S  + CRH+L+
Sbjct: 538 GSLSLCCGRLMALAVGALHVARHVNTAGTASADTRCRHELA 578


>SB_5854| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.3e-17)
          Length = 1850

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 20/52 (38%), Positives = 25/52 (48%)
 Frame = -3

Query: 222  RRGRTASDAPRIPLHRPR*CHRAATS*VASSWRAPERRDTRPSMSPVGCHEP 67
            R G TA+  P +P  RP  C R A      S+R P+  D   S SP   H+P
Sbjct: 1601 RPGMTATPPPPLPTRRPSSCSRPAPQ---LSYRPPDVTDVLCSNSP-RHHQP 1648


>SB_21575| Best HMM Match : Trypsin (HMM E-Value=0)
          Length = 696

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = +1

Query: 91  H*WPSIAPLRSTPRARDSTCGGTVTSPRTMQWNSGCVASCTPPALT 228
           H WP    LR  P  R  +CGGT+ S R +   S CV     P+ T
Sbjct: 39  HSWPWQISLR--PYGRYHSCGGTLISDRWVVTASHCVHKNPRPSYT 82


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,040,626
Number of Sequences: 59808
Number of extensions: 434535
Number of successful extensions: 1112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)